Parental gene:

ENSCJAG00000014622

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:124262307..124267862(-)


>ENSCJAG00000014622
ATGGCTGGGCGAAAACTTGCTCTAAAAACCATTGACTGGATAGCTTTTTGGGAGATCATACCCCAAAACCAAAAGGCCAT
TGCTAATTCCCTGAAATCCTGGAATGAGATCCTAACCTCCAGGTTGGCTGCTTTACCTGAGAATCCACCATCTATTGACT
GGGCTTACTACAAGGCCAATGTGGCCAAAGCAGGCTTGGTGGATGACTTTGAGAAGAAGTTTAATGCCCTGAAGGTTCCT
ATACCAGAGGATCCATATACTGCCCTGGTGGATGCTGAAGAAAAAGAAGATGTGAAGTCTTGTGCTGAGTGGGTGTCTCT
CTCAAAGGCCAGGGTTGTAGAATATGAGAAAAAGATGGAGAAGTATAAGAACTTAATTCCATTTGAACAGATGACCATTG
AGGACTTGAACGAAGCTTTCCCAGAAACCAAATTGGACAAGCAAAAGTATCCCTATTGGCCTCACCAACCAATTGAGAAT
TTATAA

Library Parental gene expression (RPM)
SRP051959_colon 31 .37 RPM
SRP051959_heart 68 .41 RPM
SRP051959_kidney 48 .30 RPM
SRP051959_liver 54 .97 RPM
SRP051959_lung 18 .40 RPM
SRP051959_lymph_node 18 .13 RPM
SRP051959_skeletal_muscle 90 .15 RPM
SRP051959_spleen 21 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009115 ortholog_one2many 6 retrogenes
retro_amel_1265, retro_amel_1560, retro_amel_1615, retro_amel_1672, retro_amel_1823, retro_amel_921,
Bos taurus ENSBTAG00000021227 ortholog_many2many 5 retrogenes
retro_btau_1663, retro_btau_319, retro_btau_608, retro_btau_674, retro_btau_823,
Canis familiaris ENSCAFG00000004703 ortholog_many2many 1 retrogene
retro_cfam_178,
Cavia porcellus ENSCPOG00000004022 ortholog_one2many 3 retrogenes
retro_cpor_1429, retro_cpor_547, retro_cpor_972,
Dasypus novemcinctus ENSDNOG00000006913 ortholog_one2many 2 retrogenes
retro_dnov_1725, retro_dnov_412,
Equus caballus ENSECAG00000009487 ortholog_one2many 2 retrogenes
retro_ecab_526, retro_ecab_706,
Echinops telfairi ENSETEG00000003217 ortholog_one2many 8 retrogenes
retro_etel_133, retro_etel_172, retro_etel_1894, retro_etel_266, retro_etel_283, retro_etel_419, retro_etel_713, retro_etel_97,
Felis catus ENSFCAG00000022888 ortholog_many2many 2 retrogenes
retro_fcat_636, retro_fcat_837,
Homo sapiens ENSG00000167863 ortholog_one2many 4 retrogenes
retro_hsap_1133, retro_hsap_1561, retro_hsap_4134, retro_hsap_4223,
Gorilla gorilla ENSGGOG00000013716 ortholog_one2many 4 retrogenes
retro_ggor_1186, retro_ggor_2778, retro_ggor_2827, retro_ggor_884,
Macropus eugenii ENSMEUG00000009346 ortholog_one2many 1 retrogene
retro_meug_788,
Microcebus murinus ENSMICG00000017484 ortholog_one2many 4 retrogenes
retro_mmur_1216, retro_mmur_593, retro_mmur_785, retro_mmur_895,
Myotis lucifugus ENSMLUG00000010620 ortholog_one2many 7 retrogenes
retro_mluc_1267, retro_mluc_1386, retro_mluc_1722, retro_mluc_2076, retro_mluc_2421, retro_mluc_464, retro_mluc_833,
Macaca mulatta ENSMMUG00000011647 ortholog_many2many 1 retrogene
retro_mmul_208,
Mustela putorius furo ENSMPUG00000014048 ortholog_many2many 9 retrogenes
retro_mputfur_1266, retro_mputfur_1466, retro_mputfur_151, retro_mputfur_1589, retro_mputfur_1617, retro_mputfur_268, retro_mputfur_301, retro_mputfur_405, retro_mputfur_904,
Mus musculus ENSMUSG00000034566 ortholog_many2many 6 retrogenes
retro_mmus_1296, retro_mmus_168, retro_mmus_1793, retro_mmus_259, retro_mmus_2794, retro_mmus_298,
Nomascus leucogenys ENSNLEG00000000561 ortholog_one2many 4 retrogenes
retro_nleu_1057, retro_nleu_1728, retro_nleu_2478, retro_nleu_927,
Oryctolagus cuniculus ENSOCUG00000015537 ortholog_one2many 2 retrogenes
retro_ocun_1332, retro_ocun_655,
Otolemur garnettii ENSOGAG00000001990 ortholog_one2many 4 retrogenes
retro_ogar_1372, retro_ogar_2438, retro_ogar_436, retro_ogar_736,
Procavia capensis ENSPCAG00000015330 ortholog_one2many 2 retrogenes
retro_pcap_160, retro_pcap_296,
Pongo abelii ENSPPYG00000008615 ortholog_one2many 4 retrogenes
retro_pabe_1291, retro_pabe_3415, retro_pabe_3416, retro_pabe_3470,
Pan troglodytes ENSPTRG00000009628 ortholog_one2many 4 retrogenes
retro_ptro_1050, retro_ptro_2810, retro_ptro_2867, retro_ptro_769,
Rattus norvegicus ENSRNOG00000003626 ortholog_many2many 1 retrogene
retro_rnor_197,
Sorex araneus ENSSARG00000013370 ortholog_one2many 3 retrogenes
retro_sara_434, retro_sara_473, retro_sara_474,
Sarcophilus harrisii ENSSHAG00000018708 ortholog_one2many 2 retrogenes
retro_shar_711, retro_shar_726,
Ictidomys tridecemlineatus ENSSTOG00000015154 ortholog_one2many 2 retrogenes
retro_itri_1086, retro_itri_846,
Tupaia belangeri ENSTBEG00000012545 ortholog_many2many 3 retrogenes
retro_tbel_1122, retro_tbel_1184, retro_tbel_728,
Tursiops truncatus ENSTTRG00000002618 ortholog_one2many 2 retrogenes
retro_ttru_1298, retro_ttru_739,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_456 72.67 99.38
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2. retro_cjac_737 97.52 100.00
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3. retro_cjac_739 83.44 96.89
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4. retro_cjac_1005 76.54 100.00
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5. retro_cjac_1036 77.78 93.17
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6. retro_cjac_1159 90.80 100.00
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7. retro_cjac_1740 99.38 100.00
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8. retro_cjac_1825 61.18 50.93
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9. retro_cjac_1831 87.73 100.00
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10. retro_cjac_2096 96.12 80.12
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11. retro_cjac_2196 80.17 74.53
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12. retro_cjac_2488 92.25 80.12
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13. retro_cjac_2543 100.00 100.00
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14. retro_cjac_2849 95.68 100.00
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15. retro_cjac_3141 80.50 97.52
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Download FASTA sequences of all ENSCJAG00000014622 retrocopies