RetrogeneDB ID: | retro_cjac_2196 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:152726959..152727315(+) | ||
Located in intron of: | ENSCJAG00000020921 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014622 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.17 % |
Parental protein coverage: | 74.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LAALPENPPSIDWAYYKANVAKAGLVDDFEKKFNALKVPIPEDPYTALVDAEEKEDVKSCAEWVSLSKAR |
LAALPEN.P.IDWAYYKA.VAKAGLVDDF..K.NALK.P.PED.Y.A.VDA.EK.DV.SCAEWVSLSKAR | |
Retrocopy | LAALPENLPPIDWAYYKASVAKAGLVDDFGRKLNALKFPVPEDQYSAQVDAAEK-DVNSCAEWVSLSKAR |
Parental | VVEYEKKMEKYKNLIPFEQMTIEDLNEAFPETKLDKQ-KYPYWPHQPIENL |
..EYEK.MEK.K..IPFEQMTIEDLNEAFPETKLDKQ.KYPY.PHQ..ENL | |
Retrocopy | IAEYEKQMEKMKK*IPFEQMTIEDLNEAFPETKLDKQ<KYPYCPHQLMENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .91 RPM | 31 .37 RPM |
SRP051959_heart | 0 .82 RPM | 68 .41 RPM |
SRP051959_kidney | 1 .71 RPM | 48 .30 RPM |
SRP051959_liver | 0 .15 RPM | 54 .97 RPM |
SRP051959_lung | 1 .27 RPM | 18 .40 RPM |
SRP051959_lymph_node | 1 .60 RPM | 18 .13 RPM |
SRP051959_skeletal_muscle | 0 .39 RPM | 90 .15 RPM |
SRP051959_spleen | 2 .21 RPM | 21 .87 RPM |