RetrogeneDB ID: | retro_mmus_2794 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:140420170..140420652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Atp5h | ||
Ensembl ID: | ENSMUSG00000034566 | ||
Aliases: | Atp5h, 0610009D10Rik | ||
Description: | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d [Source:MGI Symbol;Acc:MGI:1918929] |
Percent Identity: | 87.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGRKLALKTIDWVSFVEVMPQNQKAIGNALKSWNETFHARLASLSEKPPAIDWAYYRANVAKPGLVDDF |
MAGRKLALKTIDWVSFVE.MP.NQKAIG.ALKSWNETFH.RLASLSEKPPAIDWA.YRANVAKPGLVDDF | |
Retrocopy | MAGRKLALKTIDWVSFVEIMPPNQKAIGKALKSWNETFHTRLASLSEKPPAIDWAFYRANVAKPGLVDDF |
Parental | EKKYNALKIPVPEDKYTALVD-QEEKEDVKSCAEFVSGSQLRIQEYEKQLEKMRNIIPFDQMTIDDLNEI |
EK.YNALKIPVPEDK.TALVD.QEE..DVKSCAEF.SG.QLR.QE.EKQLEK.RN.IPFDQMT.DD.NEI | |
Retrocopy | EKQYNALKIPVPEDKHTALVD<QEETGDVKSCAEFASGPQLRTQECEKQLEKTRNTIPFDQMTSDDSNEI |
Parental | FPETKLDKKKYPYWPHQPIENL |
FPE.KLDKKKYPYWPHQPIE.L | |
Retrocopy | FPEAKLDKKKYPYWPHQPIESL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 86 .98 RPM |
SRP007412_cerebellum | 0 .00 RPM | 92 .53 RPM |
SRP007412_heart | 0 .06 RPM | 368 .68 RPM |
SRP007412_kidney | 0 .08 RPM | 241 .89 RPM |
SRP007412_liver | 0 .00 RPM | 91 .29 RPM |
SRP007412_testis | 0 .00 RPM | 58 .45 RPM |