RetrogeneDB ID: | retro_fcat_636 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:98356006..98356253(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022888 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.93 % |
Parental protein coverage: | 52.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LKVPVPEDKYTVQVDAEEREDVKSCAEFLSLSKARIVEYEKELEKMKNIIPFDQMTIEDLNEVFPETKLD |
L.VPV.E.KYTVQ.DA...ED.KSCAE.LS..KAR..EY.KE..K.KNIIPFDQMT.EDLN..F.E.KLD | |
Retrocopy | LEVPVSENKYTVQGDANKKED-KSCAEVLSP*KARTGEYQKER*KRKNIIPFDQMTSEDLND-FTEIKLD |
Parental | KKKYPY-WPHKPIENL |
.KKY.Y.WPHKPIENL | |
Retrocopy | -KKYLY>WPHKPIENL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 64 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 149 .85 RPM |
SRP017611_liver | 0 .00 RPM | 67 .73 RPM |