RetrogeneDB ID: | retro_mluc_1798 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429914:2280885..2281257(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.12 % |
Parental protein coverage: | 59.07 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | SEFSKKCSERWKTMSAKEKGKFEDMAKAD-KARYEREMKTYIPPKGETKKKFKDPNAPKRP-PSAFFLFC |
S.........WKTMSAKEKGK.EDMAK.D....YEREMK.YIPP.GETKKKFKDPNA.KRP...AFFLFC | |
Retrocopy | SQSCLRSAQTWKTMSAKEKGKTEDMAKLD>RPVYEREMKNYIPP*GETKKKFKDPNALKRP<SLAFFLFC |
Parental | SE-YRPKIKGE-HPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK |
S..YRP.IKGE..P.LSIGD.AKKLGEM.N.TA..D.....K..AK..EKY.K.IA....K | |
Retrocopy | SS<YRPNIKGE>NPSLSIGDAAKKLGEM*NHTA--DDSSLRKEDAK-QEKYKKGIATH*VK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |