RetrogeneDB ID: | retro_mluc_1773 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429905:1395981..1396472(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.11 % |
Parental protein coverage: | 76.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY-IPPKG |
SY.F.V.TC.EEHKKKHPDASVNFSEFSK.CSERWKT..AKEK.K.EDMAKADKA.YEREM....IPPKG | |
Retrocopy | SYVFCVHTCQEEHKKKHPDASVNFSEFSK-CSERWKTICAKEKRKVEDMAKADKAHYEREMRII<IPPKG |
Parental | -ETK-KKFKDPNAPKRPPSAFFLFCSEYRPK-IKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK |
.E.K.KKFKDPNAP..PPSAFFLFCS...PK.IKGEH.G..IGDVAKK.GEMWN.TAA.DKQP.EK.AAK | |
Retrocopy | <ENKQKKFKDPNAPMMPPSAFFLFCSKL-PK>IKGEHSGFPIGDVAKKVGEMWNHTAAGDKQPDEKTAAK |
Parental | LKEKYEKDIAAYRAKGKPDAAKKGVVKAE |
LKEKY.KDIAA..AKGKPDAAKKG...AE | |
Retrocopy | LKEKYKKDIAAN*AKGKPDAAKKGSCQAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |