RetrogeneDB ID: | retro_btau_224 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:11057898..11058546(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000014862 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSBTAG00000018103 | ||
Aliases: | None | ||
Description: | High mobility group protein B1 [Source:UniProtKB/Swiss-Prot;Acc:P10103] |
Percent Identity: | 98.6 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRGKMSSYAFFVQTCREEH.KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK.DKAR | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVDKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA.DD | |
Retrocopy | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAVDD |
Parental | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE |
KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE | |
Retrocopy | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEEEEE |
Parental | DDDDE |
DDDDE | |
Retrocopy | DDDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .14 RPM | 58 .25 RPM |
ERP005899_muscle | 2 .06 RPM | 183 .02 RPM |
SRP017611_brain | 0 .50 RPM | 53 .35 RPM |
SRP017611_kidney | 0 .83 RPM | 69 .70 RPM |
SRP017611_liver | 0 .15 RPM | 33 .75 RPM |
SRP030211_testis | 0 .60 RPM | 78 .13 RPM |