RetrogeneDB ID: | retro_itri_444 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393292.1:8406414..8406894(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.86 % |
Parental protein coverage: | 83.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GKGDPKKPRGKMSSY-AFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD-KA |
G.G.PKK.RG.MSS..A.FVQTC.EEH.K.HP..SVNFSEF.K.CSERWKTM...EKGKFED..KA..KA | |
Retrocopy | GHGEPKKARGEMSSV<AVFVQTCQEEHEK-HPGVSVNFSEFAKNCSERWKTMHGEEKGKFEDTTKAS<KA |
Parental | RYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEY-RPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
.Y.REMKTYIPPKG...KKFKDP....RPPSA.FLFCS.Y...KIK.EHP.LSIGDVAKK..E...N..A | |
Retrocopy | YYKREMKTYIPPKGKIEKKFKDPHVTHRPPSA-FLFCSQY<SRKIKTEHPVLSIGDVAKKQREV-HNSSA |
Parental | DDKQPYEKKAAKLKEKYEKKDIAAYRAK |
DDKQP.E.KAA.LK.KY.K.DI.AY... | |
Retrocopy | DDKQP*EQKAAELKGKY-KQDITAYKQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |