RetrogeneDB ID: | retro_mluc_2460 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430454:188904..189274(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000001782 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88. % |
Parental protein coverage: | 57.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW |
KADKARYER.MKTYIPP.KG..K..........RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW | |
Retrocopy | KADKARYERKMKTYIPP>KGKQKRNSRI-SMHLRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMW |
Parental | NNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEE |
NNTAADDKQPYEKKAAKLKEKYEKDIAA.RAKGKPDAAKKGVVKAEKSKKKKEEE | |
Retrocopy | NNTAADDKQPYEKKAAKLKEKYEKDIAAFRAKGKPDAAKKGVVKAEKSKKKKEEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |