RetrogeneDB ID: | retro_mluc_2013 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429987:1584146..1584622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.16 % |
Parental protein coverage: | 74.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDP-KKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
..KGD..KKP.G.MSSYAFFVQTC.EEHKK.HP.A.VNFSEFSKKCSERWKTMSAKEKGK.E..AKADKA | |
Retrocopy | VAKGDS>KKPGGRMSSYAFFVQTCWEEHKK*HPGAAVNFSEFSKKCSERWKTMSAKEKGKYEHVAKADKA |
Parental | RYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
RYEREMKTY....G..KK..K.DPNAPKRPP.AF.LFC.EY.PKIKGEHPGLSIGD.A.KLGEMWNNTAA | |
Retrocopy | RYEREMKTYPS*RG-NKKEIK>DPNAPKRPPLAFSLFCFEYPPKIKGEHPGLSIGDIAEKLGEMWNNTAA |
Parental | DDKQPYEKKAAKLKEKYEKDIA |
DDK......AA.LKEKY.K.IA | |
Retrocopy | DDKLD-KRTAADLKEKYGKNIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |