RetrogeneDB ID: | retro_itri_518 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393298.1:4725684..4726188(+) | ||
Located in intron of: | ENSSTOG00000014397 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.71 % |
Parental protein coverage: | 86.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRGKMSSYAFFVQTC.EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK..KA. | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCWEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKVIKAH |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YEREMKTYIPPKGET.KKFKDPNAPKRPPSAFFLFCSEYRPKI.GEHPGL.IGDVAKKLGEMWNNTAADD | |
Retrocopy | YEREMKTYIPPKGET-KKFKDPNAPKRPPSAFFLFCSEYRPKIEGEHPGLFIGDVAKKLGEMWNNTAADD |
Parental | KQPYEKKAAKLKEKYEKKDIAAYRAKGKPD |
KQPYEKKAAKLKEKY.KKDIAA.RAKGKPD | |
Retrocopy | KQPYEKKAAKLKEKY-KKDIAACRAKGKPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |