RetrogeneDB ID:

retro_etel_1146

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_218348:2756..3174(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000017323
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000004048
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_1146
TTTTTTGTGTAAACTTGCCTGGAGTCCCACAAGCGGCAGCGCCCAGCTGCTTCTGTCCGTTTCTCAGAGTTCTAAGAAGG
GCTGGAGAAGTGGAAGAGCATGTCTGCTAAAGAGAAGGGGAAATTCGAAGCCATGGCTAAGGCGGACAAGGCCTGTTAGG
AGAGATCAATGAAAACTTCTATCCTTCCTAAAGGGAAGAGAAAAAAAGGTCAAGGATCCCAATGCACCCTTGAGGCCCCC
TTCAGCCTTTTTCTTGTTTTGTTCAGACTATCACCCCCAAATCAAAGGCAAGCACCCCAGTCTGTCCATTGGGGAGGTTG
CGAAGAAGCTGGGAGAGATGTGGAATCACACAGCCGACAACAACTGGCCTTATAAAAAAGCAGCCAAGCTGAAGGAGAAA
TACCATCAGGATATTGCT

ORF - retro_etel_1146 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.53 %
Parental protein coverage: 66.51 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP-KGETK
FFV.TC.E.HK...P.ASV.FSEF.....E.WK.MSAKEKGKFE.MAKADKA..ER.MKT.I.P.KG...
RetrocopyFFV*TCLESHKRQRPAASVRFSEF*EGL-EKWKSMSAKEKGKFEAMAKADKAC*ERSMKTSILP>KGR-E
ParentalKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYE
KK.KDPNAP.RPPSAFFLFCS.Y.P.IKG.HP.LSIG.VAKKLGEMWN.T.AD...PY.KKAAKLKEKY.
RetrocopyKKVKDPNAPLRPPSAFFLFCSDYHPQIKGKHPSLSIGEVAKKLGEMWNHT-ADNNWPY-KKAAKLKEKYH
ParentalKDIA
.DIA
RetrocopyQDIA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1146 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 339 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000088807 retrocopies
Bos taurus ENSBTAG000000181032 retrocopies
Canis familiaris ENSCAFG0000000659713 retrocopies
Choloepus hoffmanni ENSCHOG0000000242316 retrocopies
Callithrix jacchus ENSCJAG0000002161511 retrocopies
Cavia porcellus ENSCPOG000000039851 retrocopy
Echinops telfairi ENSETEG00000004048 18 retrocopies
Echinops telfairi ENSETEG000000103793 retrocopies
Echinops telfairi ENSETEG000000156894 retrocopies
Echinops telfairi ENSETEG000000163791 retrocopy
Homo sapiens ENSG0000018940337 retrocopies
Gorilla gorilla ENSGGOG0000002676423 retrocopies
Loxodonta africana ENSLAFG000000002694 retrocopies
Macropus eugenii ENSMEUG000000013802 retrocopies
Myotis lucifugus ENSMLUG0000002597917 retrocopies
Macaca mulatta ENSMMUG000000233993 retrocopies
Monodelphis domestica ENSMODG0000000923814 retrocopies
Oryctolagus cuniculus ENSOCUG0000002133516 retrocopies
Otolemur garnettii ENSOGAG00000003205104 retrocopies
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Rattus norvegicus ENSRNOG000000298131 retrocopy
Sorex araneus ENSSARG0000000447014 retrocopies
Sarcophilus harrisii ENSSHAG000000140342 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000044319 retrocopies
Tarsius syrichta ENSTSYG000000063287 retrocopies



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