RetrogeneDB ID: | retro_itri_991 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393357.1:5943873..5944333(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.34 % |
Parental protein coverage: | 78.68 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYE |
KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSE.WKTM.AKEKGK.EDMAKA.KA..E | |
Retrocopy | KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSEMWKTMFAKEKGKLEDMAKANKAH*E |
Parental | REMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVA-KKLG-EMWNNTAADD |
RE.K..IP.KGE.KKKF.DPN..KR.P......CS.Y.PK.KGEHPGLSI..V..K..G.E..NNTAADD | |
Retrocopy | REIKSCIPTKGESKKKFEDPNVLKRSPMPSSC-CS*YCPKMKGEHPGLSINNVV<KETG<ER*NNTAADD |
Parental | KQPYEKKAAKLKEKYEK |
KQPYEKKAAKLKEK.EK | |
Retrocopy | KQPYEKKAAKLKEK*EK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |