RetrogeneDB ID: | retro_itri_238 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393281.1:9474100..9474628(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.48 % |
Parental protein coverage: | 90.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK-ADKA |
MGKG.PKK.RGKMS.YAFFVQ...EEHKKKHPDASVNFSE.SK.CSE........E.GK....AK.A.KA | |
Retrocopy | MGKGVPKKLRGKMSPYAFFVQVFLEEHKKKHPDASVNFSELSKNCSEVEEHVC*RE-GKI*SHAK>AGKA |
Parental | RYERE-MKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
.YERE.MK.YIPPKGETKKKF.DP.APKRPP.AFF.FCSEY.PKIKGE..GLSIGDVAK.LGE.WN...A | |
Retrocopy | *YERE<MKAYIPPKGETKKKFNDPTAPKRPPLAFF-FCSEYHPKIKGEQSGLSIGDVAKTLGEIWNPSTA |
Parental | DDKQPYEKKAAKLKEKYEKKDIAAYRAKGKPDAAKKGVVKA |
.DKQPYEKKA.K.KEKY.KK..A.Y.AKGKPDAAK.GV.KA | |
Retrocopy | NDKQPYEKKASKPKEKY-KKNFATY*AKGKPDAAKTGVIKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |