RetrogeneDB - Parental gene ENSOCUG00000021335 details

                            
>ENSOCUG00000021335
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA

TAAGAAGAAGCACCCAGATGCTTCCGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG

CTAAAGAGAAGGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTATATCCCT

CCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCGCCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTCTGTTC

TGAGTATCGCCCCAAAATCAAAGGAGAGCATCCTGGCCTGTCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGA

ATAACACTGCTGCAGATGACAAGCAGCCCTACGAGAAGAAGGCTGCCAAGCTGAAGGAAAAGTACGAGAAGAAGGATATT

GCTGCATACCGAGCTAAAGGAAAACCTGATGCAGCGAAAAAGGGAGTCGTCAAGGCTGAAAAGAGC

Library	Parental gene expression (RPM)
SRP017611_brain	47 .63 RPM
SRP017611_kidney	38 .72 RPM
SRP017611_liver	23 .58 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000008880	ortholog_one2many	7 retrogenes	retro_amel_1130, retro_amel_1216, retro_amel_1299, retro_amel_1389, retro_amel_1545, retro_amel_1629, retro_amel_1767,
Bos taurus	ENSBTAG00000018103	possible_ortholog	2 retrogenes	retro_btau_1551, retro_btau_224,
Canis familiaris	ENSCAFG00000006597	possible_ortholog	13 retrogenes	retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Choloepus hoffmanni	ENSCHOG00000002423	possible_ortholog	16 retrogenes	retro_chof_108, retro_chof_1130, retro_chof_1214, retro_chof_148, retro_chof_164, retro_chof_1708, retro_chof_1741, retro_chof_1764, retro_chof_1797, retro_chof_2155, retro_chof_2484, retro_chof_443, retro_chof_538, retro_chof_591, retro_chof_720, retro_chof_795,
Callithrix jacchus	ENSCJAG00000021615	possible_ortholog	11 retrogenes	retro_cjac_1042, retro_cjac_1546, retro_cjac_1819, retro_cjac_1842, retro_cjac_1934, retro_cjac_2269, retro_cjac_2901, retro_cjac_2934, retro_cjac_3090, retro_cjac_718, retro_cjac_895,
Cavia porcellus	ENSCPOG00000003985	ortholog_one2one	1 retrogene	retro_cpor_69,
Echinops telfairi	ENSETEG00000004048	ortholog_one2many	18 retrogenes	retro_etel_1092, retro_etel_111, retro_etel_1146, retro_etel_1290, retro_etel_1293, retro_etel_146, retro_etel_1481, retro_etel_1587, retro_etel_1892, retro_etel_1943, retro_etel_2015, retro_etel_453, retro_etel_498, retro_etel_508, retro_etel_577, retro_etel_826, retro_etel_827, retro_etel_871,
Homo sapiens	ENSG00000189403	ortholog_one2many	37 retrogenes	retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla	ENSGGOG00000026764	possible_ortholog	23 retrogenes	retro_ggor_1057, retro_ggor_1212, retro_ggor_1421, retro_ggor_1596, retro_ggor_1637, retro_ggor_1662, retro_ggor_1735, retro_ggor_1777, retro_ggor_1856, retro_ggor_1951, retro_ggor_1977, retro_ggor_213, retro_ggor_2422, retro_ggor_2441, retro_ggor_2478, retro_ggor_259, retro_ggor_2897, retro_ggor_3013, retro_ggor_388, retro_ggor_448, retro_ggor_483, retro_ggor_753, retro_ggor_964,
Loxodonta africana	ENSLAFG00000000269	possible_ortholog	4 retrogenes	retro_lafr_349, retro_lafr_512, retro_lafr_607, retro_lafr_685,
Macropus eugenii	ENSMEUG00000001380	possible_ortholog	2 retrogenes	retro_meug_1591, retro_meug_825,
Myotis lucifugus	ENSMLUG00000025979	possible_ortholog	17 retrogenes	retro_mluc_1062, retro_mluc_1103, retro_mluc_1446, retro_mluc_1584, retro_mluc_1591, retro_mluc_1608, retro_mluc_1615, retro_mluc_1773, retro_mluc_1798, retro_mluc_2013, retro_mluc_2201, retro_mluc_2460, retro_mluc_506, retro_mluc_551, retro_mluc_800, retro_mluc_809, retro_mluc_953,
Macaca mulatta	ENSMMUG00000023399	possible_ortholog	3 retrogenes	retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica	ENSMODG00000009238	possible_ortholog	14 retrogenes	retro_mdom_1088, retro_mdom_1144, retro_mdom_1228, retro_mdom_1689, retro_mdom_1727, retro_mdom_1819, retro_mdom_2007, retro_mdom_2024, retro_mdom_3, retro_mdom_434, retro_mdom_548, retro_mdom_72, retro_mdom_760, retro_mdom_958,
Oryctolagus cuniculus	ENSOCUG00000000074	other_paralog	1 retrogene	retro_ocun_1829,
Oryctolagus cuniculus	ENSOCUG00000005986	other_paralog	7 retrogenes	retro_ocun_1033, retro_ocun_1913, retro_ocun_1914, retro_ocun_534, retro_ocun_568, retro_ocun_891, retro_ocun_931,
Otolemur garnettii	ENSOGAG00000003205	possible_ortholog	104 retrogenes	retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Rattus norvegicus	ENSRNOG00000029813	possible_ortholog	1 retrogene	retro_rnor_421,
Sorex araneus	ENSSARG00000004470	ortholog_one2many	14 retrogenes	retro_sara_131, retro_sara_182, retro_sara_259, retro_sara_293, retro_sara_302, retro_sara_342, retro_sara_378, retro_sara_402, retro_sara_47, retro_sara_564, retro_sara_576, retro_sara_613, retro_sara_655, retro_sara_765,
Sarcophilus harrisii	ENSSHAG00000014034	possible_ortholog	2 retrogenes	retro_shar_136, retro_shar_634,
Ictidomys tridecemlineatus	ENSSTOG00000000443	possible_ortholog	19 retrogenes	retro_itri_1060, retro_itri_1220, retro_itri_127, retro_itri_1489, retro_itri_1531, retro_itri_1580, retro_itri_1644, retro_itri_1852, retro_itri_233, retro_itri_238, retro_itri_444, retro_itri_518, retro_itri_553, retro_itri_584, retro_itri_712, retro_itri_754, retro_itri_792, retro_itri_825, retro_itri_991,
Tarsius syrichta	ENSTSYG00000006328	possible_ortholog	7 retrogenes	retro_tsyr_1405, retro_tsyr_1621, retro_tsyr_1744, retro_tsyr_1937, retro_tsyr_1945, retro_tsyr_632, retro_tsyr_76,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ocun_36	95.43	96.15	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ocun_285	97.27	100.00	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ocun_471	96.27	73.08	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ocun_616	53.72	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ocun_633	74.15	80.22	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ocun_737	79.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ocun_825	93.85	98.35	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ocun_1039	58.27	74.18	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ocun_1112	65.41	99.45	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ocun_1368	79.07	70.33	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ocun_1407	92.22	98.90	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ocun_1554	72.28	100.00	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_ocun_1658	98.90	100.00	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_ocun_1739	69.01	76.92	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_ocun_1882	64.61	95.05	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_ocun_1937	52.94	64.29	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSOCUG00000021335 retrocopies

Parental gene:	HMGB1, ENSOCUG00000021335
Aliases:	None
Description:	high mobility group box 1 (HMGB1), mRNA [Source:RefSeq mRNA;Acc:NM_001171281]
Organism:	*Rabbit (Oryctolagus cuniculus)*
Coordinates:	GL018702:887538..889704(-)

Parental gene:

HMGB1, ENSOCUG00000021335