Parental gene:

HMGB1, ENSOCUG00000021335

Aliases:None
Description:high mobility group box 1 (HMGB1), mRNA [Source:RefSeq mRNA;Acc:NM_001171281]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018702:887538..889704(-)


>ENSOCUG00000021335
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA
TAAGAAGAAGCACCCAGATGCTTCCGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAGAAGGGAAAATTTGAAGACATGGCAAAGGCGGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTATATCCCT
CCTAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATGCGCCCAAGAGGCCTCCTTCGGCCTTTTTCTTGTTCTGTTC
TGAGTATCGCCCCAAAATCAAAGGAGAGCATCCTGGCCTGTCCATTGGTGATGTTGCAAAGAAACTGGGAGAGATGTGGA
ATAACACTGCTGCAGATGACAAGCAGCCCTACGAGAAGAAGGCTGCCAAGCTGAAGGAAAAGTACGAGAAGAAGGATATT
GCTGCATACCGAGCTAAAGGAAAACCTGATGCAGCGAAAAAGGGAGTCGTCAAGGCTGAAAAGAGC

Library Parental gene expression (RPM)
SRP017611_liver 23 .58 RPM
SRP017611_kidney 38 .72 RPM
SRP017611_brain 47 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008880 ortholog_one2many 7 retrogenes
Bos taurus ENSBTAG00000018103 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
Choloepus hoffmanni ENSCHOG00000002423 possible_ortholog 16 retrogenes
Callithrix jacchus ENSCJAG00000021615 possible_ortholog 11 retrogenes
Cavia porcellus ENSCPOG00000003985 ortholog_one2one 1 retrogene
Echinops telfairi ENSETEG00000004048 ortholog_one2many 18 retrogenes
Homo sapiens ENSG00000189403 ortholog_one2many 37 retrogenes
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
Loxodonta africana ENSLAFG00000000269 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
Myotis lucifugus ENSMLUG00000025979 possible_ortholog 17 retrogenes
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
Oryctolagus cuniculus ENSOCUG00000000074 other_paralog 1 retrogene
Oryctolagus cuniculus ENSOCUG00000005986 other_paralog 7 retrogenes
Otolemur garnettii ENSOGAG00000003205 possible_ortholog 104 retrogenes
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
Sorex araneus ENSSARG00000004470 ortholog_one2many 14 retrogenes
Sarcophilus harrisii ENSSHAG00000014034 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000000443 possible_ortholog 19 retrogenes
Tarsius syrichta ENSTSYG00000006328 possible_ortholog 7 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_36 95.43 96.15
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2. retro_ocun_285 97.27 100.00
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3. retro_ocun_471 96.27 73.08
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4. retro_ocun_616 53.72 100.00
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5. retro_ocun_633 74.15 80.22
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6. retro_ocun_737 79.68 100.00
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7. retro_ocun_825 93.85 98.35
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8. retro_ocun_1039 58.27 74.18
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9. retro_ocun_1112 65.41 99.45
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10. retro_ocun_1368 79.07 70.33
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11. retro_ocun_1407 92.22 98.90
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12. retro_ocun_1554 72.28 100.00
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13. retro_ocun_1658 98.90 100.00
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14. retro_ocun_1739 69.01 76.92
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15. retro_ocun_1882 64.61 95.05
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16. retro_ocun_1937 52.94 64.29
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Download FASTA sequences of all ENSOCUG00000021335 retrocopies