RetrogeneDB ID: | retro_mluc_809 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429777:3111718..3112091(+) | ||
Located in intron of: | ENSMLUG00000016072 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.09 % |
Parental protein coverage: | 57.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | EREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRP-KIK-GEHPGLSIGDVAKKLGEMWNNTAA |
.REMKTY.PP.KG...K.FKD.NAPKRPPS......SEY.P.K.K..EH.GLSIGD.AKKLGE.WN.TAA | |
Retrocopy | DREMKTYSPP>KGK-QKNFKDLNAPKRPPSXXXXXXSEYHP>KSK*NEHSGLSIGDAAKKLGEIWNHTAA |
Parental | DDKQPYEKKAAKLKEKYEKDIAAYRAKGK-PDAAKKGVVKAEKSKKKKEEE-EDEEDD |
DDKQP.EKKAAKLKEKY.K.IAAY.A.G..PD.A.KGV..AEKSKKKKEEE.E.E.DD | |
Retrocopy | DDKQPDEKKAAKLKEKYGKEIAAYPAMGR>PDVA*KGVITAEKSKKKKEEE>EVEDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |