RetrogeneDB ID: | retro_itri_1644 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393601.1:917365..917809(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.32 % |
Parental protein coverage: | 74.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEH-KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
MGKGDPKKPRGK.SSYAFFVQT..EEH.KKKHPDASVNFSEFSKKCSERWKTMSAKEKGK.EDMAKA.KA | |
Retrocopy | MGKGDPKKPRGKTSSYAFFVQTYQEEH>KKKHPDASVNFSEFSKKCSERWKTMSAKEKGKLEDMAKAGKA |
Parental | RYEREMKTYIPPKGETKKKFKDPNAPKRPPSA-FFLFCSEYRPKIKGEHPGLSIGD---VAKKLGEMWNN |
RYEREMKT.IPPKGETK.....P.....P.S..F...CSEY.PKIKGEHPGLS.GD.....KKLGE.W.. | |
Retrocopy | RYEREMKTSIPPKGETKPIY--PKGLPQPSSC<F*ASCSEYHPKIKGEHPGLSTGDGAPMGKKLGERWHH |
Parental | TAADDKQPYEKK |
TAADDKQP...K | |
Retrocopy | TAADDKQPRKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |