RetrogeneDB ID: | retro_mluc_1608 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429872:326097..326495(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000022455 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 63.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MGKGDPKK-PRGKMSSYAFFVQTCREEHKK-KHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADK |
MGKGDPK...RG.MSSYAFFV.T...EHK..KHPDASVNFSEFSK..SE..K.MSAKEKGKFEDMA.... | |
Retrocopy | MGKGDPKA<TRGRMSSYAFFVRTIWMEHKD>KHPDASVNFSEFSK-FSESLKIMSAKEKGKFEDMANT-- |
Parental | ARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYR-PKIKGEHPGLSIGDVAKKLGEMWNNTA |
..YER.MKTYIPPK.ETKKKFKDPNA.KRP.SAFFLFCSEY..PKIKGEHPGLSIGD.AKKLGEMWNNTA | |
Retrocopy | THYERVMKTYIPPKEETKKKFKDPNALKRP-SAFFLFCSEYT<PKIKGEHPGLSIGDAAKKLGEMWNNTA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |