RetrogeneDB ID: | retro_mluc_1584 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429866:2840114..2840521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.77 % |
Parental protein coverage: | 63.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKK..GK.S.Y.F.VQ.C.EE...KHPDASV.FSEFSKKCSERWK.MSAKEKGK.E..A..DK.. | |
Retrocopy | MGKGDPKKQKGKISPYTFCVQACQEEPRRKHPDASVYFSEFSKKCSERWKAMSAKEKGKVEGKARVDKGP |
Parental | YER-EMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA |
.ER..MKTY.PPK.ETK.K.KDP..PKR.P....LFCSEY.P.IKGE..G..I..VAK..G.....T. | |
Retrocopy | CER<SMKTYFPPKRETKRKLKDPILPKR-PLLHLLFCSEYQPGIKGERVGPCICEVAKARGTLLQVTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |