RetrogeneDB ID: | retro_itri_1220 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393405.1:131892..132229(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000443 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.81 % |
Parental protein coverage: | 56.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTC-REEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
.GKGDPKK.RGKMSSYAFFVQTC..E.HKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA | |
Retrocopy | VGKGDPKKTRGKMSSYAFFVQTC>GEKHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
Parental | RYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPK |
RYEREMKT.IPPKGETKKKFKDPNAPKRP.SAFFLFCSEYRPK | |
Retrocopy | RYEREMKTNIPPKGETKKKFKDPNAPKRPLSAFFLFCSEYRPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |