RetrogeneDB ID: | retro_mluc_1062 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429791:10327177..10327741(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029466 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSMLUG00000025979 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.16 % |
Parental protein coverage: | 86.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVN-FSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
MGK.DP.KPR.KMS.YAFFVQTC.E.HKKK.PDASVN..SE.SKKCSERWKT..AKEKGKFE.MAK.DKA | |
Retrocopy | MGKRDPMKPRDKMSLYAFFVQTCSEKHKKKYPDASVN<LSEISKKCSERWKTIYAKEKGKFEEMAKVDKA |
Parental | RYEREMKTYIPPKGET-KKKFKDPNAPKRPPSAFF-LFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA |
RY.RE.KTYIPPKG.T.K.....P..P......F..LF.SEY.P..KGEHPGLS.GD..K.LGE.WNN.A | |
Retrocopy | RYKREVKTYIPPKGKT>KGNYRIPM*PRCLLQPFVCLF*SEYHPNVKGEHPGLSTGDISKNLGETWNNPA |
Parental | ADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEE |
ADDKQPYEKKAAKLKEKYEKD..AY.AKGK.D.AKKG.VK.EKSKKKK.E | |
Retrocopy | ADDKQPYEKKAAKLKEKYEKDTTAYQAKGKSDVAKKGDVKVEKSKKKKKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |