RetrogeneDB ID: | retro_mmus_479 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:108997633..108998617(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Krt18 | ||
Ensembl ID: | ENSMUSG00000023043 | ||
Aliases: | Krt18, CK18, K18, Krt1-18 | ||
Description: | keratin 18 [Source:MGI Symbol;Acc:MGI:96692] |
Percent Identity: | 76.06 % |
Parental protein coverage: | 77.54 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | ENRRLESKIR-EHLEKKGPQGVRDWGHYFKIIEDLRAQIFANSVDNARIVLQIDNARLAADDFRVKYETE |
ENRRLE.KI..E.LEKK.PQGVRD.GHYFK.IEDLRA.IF.NSVDNA.I.L.I.NA.LA.DDFRVKY.TE | |
Retrocopy | ENRRLERKIK>ERLEKKMPQGVRD*GHYFKTIEDLRA*IFTNSVDNAHIILRIANACLATDDFRVKYGTE |
Parental | LAMRQSVESDIHGLRKVVDDTNITRLQLETEIEALKEELLFMKKNHEEEVQGLEAQIASSGLTVEVDAPK |
LA.RQSVES.I.GL.KVVDDTNITRLQLE.EIEALKEELLFMKKNHE...Q..EA.IAS.GLTV.VDAPK | |
Retrocopy | LAKRQSVESNIYGLCKVVDDTNITRLQLEIEIEALKEELLFMKKNHEQAIQVPEARIASFGLTVQVDAPK |
Parental | SQDLSKIMADIRAQYEALAQKNREELDKYWSQQIEESTTVVTTKSAEIRDAET-TLTELRRTLQTLEIDL |
SQDLSKIMA.I..QYEAL.Q.N.EELDKYWSQQIEESTTVVTTKS....D.E..TL.EL..TLQTLEIDL | |
Retrocopy | SQDLSKIMANIGSQYEALVQQNCEELDKYWSQQIEESTTVVTTKSPKSKDTES<TLRELSCTLQTLEIDL |
Parental | DSMKNQNINLENSLGDVEARYKAQMEQLNGVLLHLESELAQTRAEGQRQAQEYEALLNIKVKLEAEIATY |
D..K.Q.INLENSLGD....YKA.MEQ.NGVLLHLE..LAQ..AEGQ.Q.QEYEALLNIKVKLE.EI..Y | |
Retrocopy | DFIKKQKINLENSLGDMVVQYKA*MEQVNGVLLHLETKLAQA*AEGQCQTQEYEALLNIKVKLEVEITIY |
Parental | RRLLEDGEDFSLNDALDSSNSMQTVQKTTTRKIVDGRVVSETNDTRVLRH |
....EDGEDFSL.DA.DS.N.M.TVQKTT..KIVDG.V.SETN.TR.LRH | |
Retrocopy | HS*FEDGEDFSLSDAMDSINYM*TVQKTTIHKIVDGKVMSETNYTRILRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .48 RPM |
SRP007412_heart | 0 .00 RPM | 2 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .77 RPM |
SRP007412_liver | 0 .00 RPM | 104 .37 RPM |
SRP007412_testis | 0 .00 RPM | 0 .59 RPM |