RetrogeneDB ID: | retro_pabe_2992 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:114574218..114575504(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 85.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNFTTRSTFSTNYRSLGSVQAPSY-GARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAG |
M.FTT.STFSTNYRSLGSVQ.PSY..ARPVSSAAS..AG..GSGS..SVS.STSF.GG.GSG.LA.G.AG | |
Retrocopy | MSFTTPSTFSTNYRSLGSVQVPSY<HARPVSSAASICAGTWGSGSGNSVSCSTSFWGGLGSGALAVGMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAGMG.IQN.KETMQSLN.RLA.YLDR.RSLETEN..LESKIR.HLEKKGPQVR.WSHYFK.I.DLRAQ | |
Retrocopy | GLAGMGSIQN-KETMQSLNNRLAPYLDRMRSLETENWKLESKIRKHLEKKGPQVRHWSHYFKTIQDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEE |
.F.NTVDNARIVLQ.DN..LAADDFRVKYETEL.M.QSVE.DIHGLRKVIDDTNVT.LQLETEIEALKEE | |
Retrocopy | NFTNTVDNARIVLQTDNVCLAADDFRVKYETELTMCQSVESDIHGLRKVIDDTNVTWLQLETEIEALKEE |
Parental | LLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEEST |
LLFMKKNHEEEVKGLQ.Q.ASSGLTVEVDAPKSQD..KIMADI.AQYD.L..KN.EELDKYWSQQIEEST | |
Retrocopy | LLFMKKNHEEEVKGLQVQNASSGLTVEVDAPKSQDHSKIMADIQAQYDKLSQKN*EELDKYWSQQIEEST |
Parental | TVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEL |
TVVTTQS.EVGAAE.TLTELRR.VQSLEIDLDSMRNLKASLENSLREVEA.YA.QMEQLNGILLHLESEL | |
Retrocopy | TVVTTQSTEVGAAEMTLTELRRIVQSLEIDLDSMRNLKASLENSLREVEALYAVQMEQLNGILLHLESEL |
Parental | AQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVV |
AQTRAEGQ.QAQEYEALLNIKVKLEAEI.TY..LLEDG..FNL..ALDSS.SMQTIQKT....IVDGKVV | |
Retrocopy | AQTRAEGQHQAQEYEALLNIKVKLEAEITTYNSLLEDGKNFNLLNALDSSTSMQTIQKTNSCWIVDGKVV |
Parental | SETNDTKVLRH |
SETNDTKVLRH | |
Retrocopy | SETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3645 |
Pan troglodytes | retro_ptro_2470 |
Gorilla gorilla | retro_ggor_2462 |