RetrogeneDB ID: | retro_amel_1896 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL195370.1:6623..7346(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000011981 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.34 % |
Parental protein coverage: | 54.14 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | LNDRLASYLERVRSLEADNQRLEMRIREHLEKKGPQVKDWGHYFKTIEELRAQIFASSVDNARIVLQIDN |
LND.L.S..ERVRS..A.NQRLE..I.EHLEKKG....DWGHYFKTI.ELR.QIF..SVDNA.I.LQ... | |
Retrocopy | LNDCLPSSVERVRSQKAHNQRLEI*IWEHLEKKGMWIRDWGHYFKTIKELRTQIFTNSVDNAYIILQTAI |
Parental | ARLAAEDFRVKYETELAMRQSVENDIHGLRKVIDDTN-VTRLQLETEIEALKEELLFMKKNHEEEVKGLQ |
A...A.DFRVKY.TEL.M.QSV..DIHG..KV.DDTN..T..QL..EIE..KEELLF.KK.H.E..KGL. | |
Retrocopy | ALCPADDFRVKYKTELVMHQSVKSDIHGPHKVFDDTN>ITWQQLDMEIETPKEELLFIKK-HKEKLKGL* |
Parental | NQIANSGLTVELDA-PKSQDLSKIMADIRAQYDELAQKNREELDKYWSQQIEESTTVVTTQTAEIGEAEM |
.QIA..GLT.ELDA.P.S.DL.KIMAD..AQY..LA.KN.EELDKY.S...EE.TTVVT....EIG.AEM | |
Retrocopy | KQIAILGLTMELDA<PRS*DLRKIMADRQAQYHKLA*KNPEELDKY*SKKTEENTTVVTV*ASEIGAAEM |
Parental | TLTELRRTAQSLEINLDSMRNLKASLENSLREVE |
.L.EL..TAQSLE.....MRNL.A.LEN.LRE.. | |
Retrocopy | MLRELKCTAQSLETHQE*MRNLNAKLENNLREAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |