RetrogeneDB ID: | retro_mmul_948 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:45569796..45571079(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000031911 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGM-GSGGLASGMAG |
MSFTT.S.FST.Y...GSVQ.P.YG..PVSS..SVYAGA.GSGS.ISVS.STSFRGGM.G.G....G... | |
Retrocopy | MSFTTCSIFSTKYQFPGSVQVPNYGTWPVSSMVSVYAGARGSGSWISVSHSTSFRGGM>GPGAWPQGWP- |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
G......IQNEKET..SLNDRLASYLDRVRSLET.N..LESKIREHLEKKG.QVRDWSHYFK.I.DLRAQ | |
Retrocopy | GVWQEWEIQNEKETI*SLNDRLASYLDRVRSLETKNW*LESKIREHLEKKGLQVRDWSHYFKTIKDLRAQ |
Parental | IFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDD-TNVTRLQLETEIEALKE |
IF.NTV.NARIV.QIDNA.LAADDFRVKYETELAM.QSVE.DIHGL.K...D.T.VT.LQLETE.EALKE | |
Retrocopy | IFENTVGNARIVQQIDNACLAADDFRVKYETELAMHQSVESDIHGLCK-VTD>TSVT*LQLETEMEALKE |
Parental | ELLFMKKNHEEEVKGLQAQIASSGLTVEVDA-PKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEE |
ELLFMKK.H.EEVKGLQAQIASS.LTVEVDA..KSQDLAKIMADIR.QYD.L.RKN.EELDKYWSQQIEE | |
Retrocopy | ELLFMKKKHKEEVKGLQAQIASSELTVEVDA<LKSQDLAKIMADIRTQYDGLTRKN*EELDKYWSQQIEE |
Parental | STTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES |
STTVVT.QS.EVG.AE..LTELRRTVQS...DL.SMRNLKASLENSLREVEA.Y.LQMEQLNGILLHLES | |
Retrocopy | STTVVTMQSTEVGDAELMLTELRRTVQSIKMDLNSMRNLKASLENSLREVEAHYTLQMEQLNGILLHLES |
Parental | ELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEE-FNLGDALDSSNSMQTIQ-KTTTRRIVD |
E.AQ.RAEGQRQAQE.EALLNIKVKLEAE.ATY..LLED.E...NLGDALDSSNSMQTIQ.KTT..R..D | |
Retrocopy | EMAQSRAEGQRQAQE*EALLNIKVKLEAESATYHCLLEDDED<LNLGDALDSSNSMQTIQ<KTTSHRTMD |
Parental | GKVVSETNDTKVLRH |
.K.VSETNDTKVLRH | |
Retrocopy | SKRVSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .34 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .94 RPM |
SRP007412_heart | 0 .00 RPM | 1 .30 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .60 RPM |
SRP007412_liver | 0 .00 RPM | 49 .60 RPM |
SRP007412_testis | 0 .00 RPM | 0 .49 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2353 |
Pan troglodytes | retro_ptro_1721 |