RetrogeneDB - Parental gene ENSCAFG00000007154 details

							
>ENSCAFG00000007154
CTGAGCCCTGGCCTCCCGAGTCGCCCTCCGGCCCTCCCTCCGAGCAGCATGAGCTTCACCGCCCGCTCCACCTTCTCCTC

CAACTACCGGTCCCTGGGCTCCGTGCAGGCGCCCAGCCACCGGGTCCGGCCCATCAGCAGCAGTGCGGCCAGCGTCTATG

CAGGCGCAGGGGGCTCGGGCTCCCGGATCTCCGTATCCCGCTCCACCAGCTTCCGGGGCGGCTGGGGGTCCGGGGGCTTG

GCCGCGGGGATGGCCGGGGGTCTGGCGGGCATAGGGGGCATCCAGGGCGAGAAGGAGACCATGCAGGACCTGAATGACCG

CCTGGCCTCCTACCTGGAGAAGGTGAGGAGCCTGGAGGCTGATAATCAGAGACTGGAGATGAAAATCCGGGAACACCTGG

AGAAGAAGGGCCCCCAGGTCAGAGACTGGGGGCATTACTTCAAGACCATCGAGGACCTGAGGGCTCAGATCTTTGCAAGT

GCCGTGGACAATGCCCGCATCGTTCTGCAGATTGACAACGCCCGGCTCGCTGCTGACGACTTCCGCGTCAAGTATGAGAC

GGAGCTGGCCATGCGCCAGTCCGTGGAGAGCGACATCCATGGGCTCCGCAAGGTCATTGATGACACCAATGTCACTCGGC

TGCAGCTAGAGACAGAGATCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGAAGAAGAACCACGAGGAGGAAGTAAAGGGT

CTACAAAACCAAATCGCCAACTCTGGGTTGACGGTGGAGTTGGATGCCCCCAAATCTCAGGACCTCAGCAAGATCATGGC

AGATATCCGGGCCCAGTATGACGAGCTGGCTCAGAAGAACCGGGAGGAGCTGGACAAGTACTGGTCTCAGCAGATCGAGG

AGAGCACCACAGTGGTCACCACACAGACCGCTGAGATCGGAGAAGCTGAGATGACCCTCACGGAGCTGAGACGTACCGCC

CAGTCCTTGGAGATCAACCTGGACTCCATGAGAAACCTGAAGGCCAGCTTGGAGAACAGCCTGAGGGAGGTCGAGACCCG

CTACGCGATGCAGATGGAGCAGCTCAACGGGGTCCTGCTGCACCTGGAGTCAGAGCTGTCCCAGACCCGGGCAGAGGGGC

AGCGCCAGGCCCAGGAGTACGAGGCCCTGCTGAACGTCAAGGTCAAGCTGGAGGCTGAGATTGCTACCTACCGTCGCCTG

TTGGAAGACGGGGAGGACTTCAGTCTTACTGACGCCCTGGACAGCAGCAACTCCTTGCATACCATCCAGAAGACCACCAC

CCGCAAGATCGTGGACGGCAAGGTGGTGTCTGAGACCAACGACACCAAAATTCTGAGGCGTTGA

Library	Parental gene expression (RPM)
SRP017611_brain	0 .00 RPM
SRP017611_kidney	93 .18 RPM
SRP017611_liver	367 .28 RPM
SRP012049_cerebellum	0 .46 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011981	ortholog_one2many	2 retrogenes	retro_amel_1366, retro_amel_1896,
Callithrix jacchus	ENSCJAG00000018165	possible_ortholog	29 retrogenes	retro_cjac_1323, retro_cjac_1457, retro_cjac_1638, retro_cjac_1847, retro_cjac_1857, retro_cjac_1885, retro_cjac_1915, retro_cjac_2074, retro_cjac_2087, retro_cjac_2179, retro_cjac_2232, retro_cjac_2252, retro_cjac_2349, retro_cjac_2614, retro_cjac_2689, retro_cjac_2842, retro_cjac_3036, retro_cjac_3145, retro_cjac_3995, retro_cjac_4001, retro_cjac_4065, retro_cjac_4120, retro_cjac_4138, retro_cjac_4158, retro_cjac_4200, retro_cjac_626, retro_cjac_794, retro_cjac_878, retro_cjac_955,
Cavia porcellus	ENSCPOG00000002618	ortholog_many2many	1 retrogene	retro_cpor_111,
Echinops telfairi	ENSETEG00000008130	possible_ortholog	1 retrogene	retro_etel_1177,
Homo sapiens	ENSG00000111057	possible_ortholog	60 retrogenes	retro_hsap_1129, retro_hsap_1153, retro_hsap_1226, retro_hsap_1404, retro_hsap_1650, retro_hsap_1774, retro_hsap_1818, retro_hsap_1907, retro_hsap_1981, retro_hsap_2115, retro_hsap_2174, retro_hsap_2242, retro_hsap_2276, retro_hsap_2353, retro_hsap_2361, retro_hsap_2433, retro_hsap_2461, retro_hsap_2517, retro_hsap_2543, retro_hsap_2565, retro_hsap_2571, retro_hsap_2626, retro_hsap_2752, retro_hsap_2848, retro_hsap_2869, retro_hsap_2877, retro_hsap_2915, retro_hsap_2922, retro_hsap_2973, retro_hsap_306, retro_hsap_3098, retro_hsap_3161, retro_hsap_3203, retro_hsap_3227, retro_hsap_3236, retro_hsap_327, retro_hsap_3400, retro_hsap_3452, retro_hsap_3492, retro_hsap_3498, retro_hsap_3567, retro_hsap_3645, retro_hsap_3651, retro_hsap_3948, retro_hsap_4145, retro_hsap_4201, retro_hsap_4215, retro_hsap_4238, retro_hsap_4277, retro_hsap_434, retro_hsap_4681, retro_hsap_4727, retro_hsap_4736, retro_hsap_4756, retro_hsap_483, retro_hsap_4915, retro_hsap_4919, retro_hsap_832, retro_hsap_846, retro_hsap_866,
Gorilla gorilla	ENSGGOG00000010157	possible_ortholog	28 retrogenes	retro_ggor_1246, retro_ggor_1513, retro_ggor_1606, retro_ggor_1641, retro_ggor_1692, retro_ggor_1725, retro_ggor_1838, retro_ggor_1914, retro_ggor_2024, retro_ggor_2062, retro_ggor_2128, retro_ggor_2201, retro_ggor_2301, retro_ggor_2360, retro_ggor_2407, retro_ggor_2462, retro_ggor_2468, retro_ggor_2653, retro_ggor_2815, retro_ggor_2823, retro_ggor_2903, retro_ggor_2941, retro_ggor_3069, retro_ggor_455, retro_ggor_685, retro_ggor_692, retro_ggor_881, retro_ggor_898,
Macropus eugenii	ENSMEUG00000012262	ortholog_one2many	14 retrogenes	retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus	ENSMLUG00000022439	ortholog_many2many	8 retrogenes	retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta	ENSMMUG00000031911	possible_ortholog	4 retrogenes	retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo	ENSMPUG00000006369	ortholog_many2many	2 retrogenes	retro_mputfur_1591, retro_mputfur_171,
Mus musculus	ENSMUSG00000023043	ortholog_one2many	2 retrogenes	retro_mmus_1152, retro_mmus_479,
Nomascus leucogenys	ENSNLEG00000017732	possible_ortholog	45 retrogenes	retro_nleu_1234, retro_nleu_1238, retro_nleu_1252, retro_nleu_1346, retro_nleu_1397, retro_nleu_1421, retro_nleu_1454, retro_nleu_1500, retro_nleu_1547, retro_nleu_1563, retro_nleu_1683, retro_nleu_1801, retro_nleu_1872, retro_nleu_1953, retro_nleu_1960, retro_nleu_2023, retro_nleu_2173, retro_nleu_2293, retro_nleu_2308, retro_nleu_2310, retro_nleu_241, retro_nleu_2494, retro_nleu_2551, retro_nleu_264, retro_nleu_2721, retro_nleu_2807, retro_nleu_2901, retro_nleu_2935, retro_nleu_3008, retro_nleu_3061, retro_nleu_353, retro_nleu_357, retro_nleu_364, retro_nleu_415, retro_nleu_427, retro_nleu_505, retro_nleu_512, retro_nleu_613, retro_nleu_639, retro_nleu_699, retro_nleu_785, retro_nleu_791, retro_nleu_824, retro_nleu_832, retro_nleu_924,
Oryctolagus cuniculus	ENSOCUG00000027691	ortholog_many2many	1 retrogene	retro_ocun_58,
Pongo abelii	ENSPPYG00000004563	possible_ortholog	60 retrogenes	retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Pan troglodytes	ENSPTRG00000004996	possible_ortholog	58 retrogenes	retro_ptro_1121, retro_ptro_1172, retro_ptro_1188, retro_ptro_1251, retro_ptro_1321, retro_ptro_1405, retro_ptro_1420, retro_ptro_1462, retro_ptro_1482, retro_ptro_1496, retro_ptro_1501, retro_ptro_1586, retro_ptro_1610, retro_ptro_1659, retro_ptro_1721, retro_ptro_1725, retro_ptro_1737, retro_ptro_1772, retro_ptro_1860, retro_ptro_193, retro_ptro_1941, retro_ptro_1946, retro_ptro_1971, retro_ptro_1977, retro_ptro_2010, retro_ptro_2094, retro_ptro_2188, retro_ptro_2244, retro_ptro_2277, retro_ptro_2310, retro_ptro_2341, retro_ptro_2366, retro_ptro_2371, retro_ptro_247, retro_ptro_2470, retro_ptro_2476, retro_ptro_264, retro_ptro_2679, retro_ptro_2817, retro_ptro_2852, retro_ptro_2861, retro_ptro_2881, retro_ptro_2900, retro_ptro_2956, retro_ptro_3079, retro_ptro_3110, retro_ptro_3144, retro_ptro_3150, retro_ptro_3169, retro_ptro_3277, retro_ptro_364, retro_ptro_581, retro_ptro_587, retro_ptro_600, retro_ptro_677, retro_ptro_787, retro_ptro_841, retro_ptro_962,
Pteropus vampyrus	ENSPVAG00000009361	ortholog_one2many	2 retrogenes	retro_pvam_140, retro_pvam_557,
Rattus norvegicus	ENSRNOG00000047393	ortholog_many2many	3 retrogenes	retro_rnor_1513, retro_rnor_2529, retro_rnor_581,
Ictidomys tridecemlineatus	ENSSTOG00000015587	ortholog_one2many	3 retrogenes	retro_itri_1288, retro_itri_1517, retro_itri_1609,
Tursiops truncatus	ENSTTRG00000012977	ortholog_one2many	2 retrogenes	retro_ttru_1273, retro_ttru_463,
Vicugna pacos	ENSVPAG00000007421	ortholog_one2many	3 retrogenes	retro_vpac_287, retro_vpac_390, retro_vpac_53,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_611	83.26	97.99	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_698	78.63	52.13	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_883	90.29	78.30	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_1045	63.83	72.71	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_1205	83.20	56.38	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_1393	81.82	65.55	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_1413	84.64	62.42	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_cfam_1672	81.64	81.43	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_cfam_2124	84.86	92.84	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_cfam_2170	89.08	51.23	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000007154 retrocopies

Parental gene:	ENSCAFG00000007154
Aliases:	KRT18, CK18
Description:	None
Organism:	*Dog (Canis familiaris)*
Coordinates:	27:2189326..2193773(-)

Parental gene:

ENSCAFG00000007154