RetrogeneDB ID: | retro_cfam_883 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:1971565..1972615(+) | ||
Located in intron of: | ENSCAFG00000003705 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007154 | ||
Aliases: | KRT18, CK18 | ||
Description: | None |
Percent Identity: | 90.29 % |
Parental protein coverage: | 78.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | EKETMQDLNDRLASYLEKVRSLEADNQRLEMKIREHLEKKGPQVRDWGHYFKTIEDLRAQIFASAVDNAR |
EKET.QD.ND.LASYLE.VRSL.ADNQRLEMKIREHLEKKGPQV.DWGHYFKTIEDL.AQIFASAVDNA. | |
Retrocopy | EKETIQDQNDHLASYLERVRSLKADNQRLEMKIREHLEKKGPQVGDWGHYFKTIEDLKAQIFASAVDNAC |
Parental | IVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEE |
IVLQIDNARLAADDF.V.YETELAM.QSVESDIHGLRKVIDDTNVT.LQLETEIEALKEELLFMK.NHEE | |
Retrocopy | IVLQIDNARLAADDFCVNYETELAMHQSVESDIHGLRKVIDDTNVTWLQLETEIEALKEELLFMK*NHEE |
Parental | EVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQYDELAQKNREELDKYWSQQIEESTTVVTTQTAEI |
EVKGLQNQIA.SGLTVELD.PKSQDLSKI.ADI.AQYD.LAQKNREELDKY.SQQI.ESTTVVTTQTAEI | |
Retrocopy | EVKGLQNQIATSGLTVELDGPKSQDLSKITADIQAQYDDLAQKNREELDKY*SQQIKESTTVVTTQTAEI |
Parental | GEAEMTLTELRRTAQSLEINLDSMRNLKASLENSLREVETRYAMQMEQLNGVLLHLESELSQTRAEGQRQ |
GEAE.T.TELR.TAQSLEINLDSMRNLKASLENSLREV.TRYAMQMEQLNGVLLHLES.LSQ.RAE.Q.Q | |
Retrocopy | GEAEITFTELRCTAQSLEINLDSMRNLKASLENSLREVKTRYAMQMEQLNGVLLHLESGLSQPRAERQCQ |
Parental | AQEYEALLNVKVKLEAEIATYRRLLEDGEDFSLTDALDSSNSLHTIQKTTTRKIVDGKVVSETNDTKILR |
AQEYEALLNVK.KLEAEIATYRRLLE.GEDFSLTDALDSSNSL.TIQK.TT.KIVD.KVVSETNDTKILR | |
Retrocopy | AQEYEALLNVKIKLEAEIATYRRLLENGEDFSLTDALDSSNSLQTIQKSTTHKIVDSKVVSETNDTKILR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .46 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .18 RPM |
SRP017611_liver | 0 .22 RPM | 367 .28 RPM |