RetrogeneDB ID: | retro_pabe_2060 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b:51367759..51368882(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 74.28 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | TSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGP |
TSF.G..GSGGL..G.A..L.GM.GIQNE..T.QSLN...ASYLDRVRS.E.EN.RL..KI.E..EKKG. | |
Retrocopy | TSFWGHWGSGGLVIGMARTLVGMQGIQNEG-TIQSLNSHQASYLDRVRS*EIENQRLDNKIWENVEKKGT |
Parental | QVRDWSHYFKIIEDLRAQIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDD |
.VRDW.HYFK.IEDLRAQIFAN.V.N..I.LQID.A.LAA.DFRVKYETELA..QSV..DIHG..KV.DD | |
Retrocopy | KVRDWGHYFKTIEDLRAQIFANSVNNGHIILQIDKAHLAANDFRVKYETELAFCQSVKSDIHGPPKVVDD |
Parental | TNVTRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAP-KSQDLAKIMADIRAQYDELA |
.NVT.LQLE.EI.ALKEELLFM.KNHEEEVKGLQ.QIAS.GLTV.VDAP.KSQDL.KIMADI.A.Y..L. | |
Retrocopy | ANVTQLQLEAEIKALKEELLFM-KNHEEEVKGLQVQIASFGLTVKVDAP<KSQDLSKIMADIWA*YNKLD |
Parental | RKNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEAR |
.KNREELDKYWSQ.IEESTTVVTTQS....AAE.TL.ELR.TVQSLEIDL...RNLKA.LENSLREVEA. | |
Retrocopy | LKNREELDKYWSQEIEESTTVVTTQSTKIRAAEMTLMELRCTVQSLEIDLYLIRNLKACLENSLREVEAC |
Parental | YALQMEQLNGILLHLESELAQTRAEGQRQAQEY-EALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSS |
...QMEQLN..L.HLESELAQT.AEGQ..A..Y..ALLNIKVKLEAEIA....LLE.GEDFNLG.ALD.S | |
Retrocopy | HSMQMEQLNRVLRHLESELAQTWAEGQP*AHKY<RALLNIKVKLEAEIASC--LLEYGEDFNLGGALDGS |
Parental | NSMQTIQKTTTRRIVDGKVVSETNDTKVLRH |
NSMQTIQ.TT..R.VDGK.VSETN.TKVLRH | |
Retrocopy | NSMQTIQQTTACRTVDGKGVSETNNTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .17 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2174 |
Pan troglodytes | retro_ptro_1659 |
Gorilla gorilla | retro_ggor_1725 |