Parental gene:

KRT18, ENSSTOG00000015587

Aliases:None
Description:keratin 18 [Source:HGNC Symbol;Acc:6430]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393322.1:10290795..10294574(+)


>ENSSTOG00000015587
ATGAGCTTCACCACCCACTCCACCACCTTCTCCACCAACTACCGGTCCCTGGGTTCCGTCCGGTCGCCCAGCCACCGGGT
CCGGCCCGCCAGCAGCGCGGCCAGTGTCTATGCAGGCGCTGGGGGCTCAGGCTCCCGGATCTCTGTGTCCCGCTCCTCCA
CGACGGGGATGGCAGGGGGTCTGTCGGGAATGGGCGGCATCCAGAACGAGAAAGAGACCATGCAAGACCTGAACGATCGC
CTGGCCTCCTACCTGGACAGAGTGAGGAGCCTGGAGACAGATAATCGGAGGCTGGAAAGCAAAATCCGAGAACATCTGGA
AAAGAAGGGACCCCAGGTCAGAGACTGGGGGCATTACTTCAAGACCATCGAGGAGCTGCGGGCTCAGATCTTTGCAAATT
CTGTGGACAACGCCCGGATCGTTCTGCAGATTGACAATGCTCGTCTTGCTGCTGATGACTTTAGAGTCAAGTACGAGACA
GAGCTGGCCATGCGCCAGTCTGTGGAGAGTGATATCCATGGGCTCCGCAAGGTCATTGATGACACCAATATCACTCGGCT
GCAGCTGGAGACGGAAATTGAGACTCTCAAGGAAGAGCTGCTCTTCATGAAGAAGAACCATGAGGAGGAAGTCAAAGGCC
TTCAAGCCCAGATTGCCAACTCTGGATTGACTGTGGAGGTGGATGCCCCCAAATCTCAGGACCTCAGCAAGATCATGGCA
GACATCCGGGCTCAATATGATGAGCTGGCTCAGAAGAACCGAGAGGAGCTGGACAAGTACTGGTCCCAGCAGATTGAGGA
AAGCACCACAGTGGTCACCTCACAGACAGCTGAGATTGGAGCTGCTGAGATAACACTCACTGAGCTGAGACGCACAGTCC
AGTCCTTGGAAATTGACCTGGACTCCATGAGAAATCTGAAGGCCAGCTTAGAGAACAGTCTGAGGGAAGTGGAGGCCCGC
TACTCCATGCAGATGGAACAGCTCAATGGGGTCCTGCTGCACCTGGAATCAGAACTGGCCCAGACACGAGCAGAGGGGCA
GCGCCAGACCCAGGACTATGAGGCCCTACTGAACATCAAGGTCAAGCTGGAGGCTGAGATTGCCACTTACCGCCGCCTGT
TAGAAGACGGAGAAGACTTCAGTCTCAATGATGCCCTGGACAGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACC
CGCAGGATTGTGGATGGCAAAATAGTGTCTGAGACCAATGACACCAAAGTGCTGAGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011981 ortholog_one2one 2 retrogenes
retro_amel_1366, retro_amel_1896,
Canis familiaris ENSCAFG00000007154 ortholog_one2many 10 retrogenes
retro_cfam_1045, retro_cfam_1205, retro_cfam_1393, retro_cfam_1413, retro_cfam_1672, retro_cfam_2124, retro_cfam_2170, retro_cfam_611, retro_cfam_698, retro_cfam_883,
Callithrix jacchus ENSCJAG00000018165 possible_ortholog 29 retrogenes
retro_cjac_1323, retro_cjac_1457, retro_cjac_1638, retro_cjac_1847, retro_cjac_1857, retro_cjac_1885, retro_cjac_1915, retro_cjac_2074, retro_cjac_2087, retro_cjac_2179, retro_cjac_2232, retro_cjac_2252, retro_cjac_2349, retro_cjac_2614, retro_cjac_2689, retro_cjac_2842, retro_cjac_3036, retro_cjac_3145, retro_cjac_3995, retro_cjac_4001, retro_cjac_4065, retro_cjac_4120, retro_cjac_4138, retro_cjac_4158, retro_cjac_4200, retro_cjac_626, retro_cjac_794, retro_cjac_878, retro_cjac_955,
Cavia porcellus ENSCPOG00000002618 ortholog_one2many 1 retrogene
retro_cpor_111,
Gorilla gorilla ENSGGOG00000010157 possible_ortholog 28 retrogenes
retro_ggor_1246, retro_ggor_1513, retro_ggor_1606, retro_ggor_1641, retro_ggor_1692, retro_ggor_1725, retro_ggor_1838, retro_ggor_1914, retro_ggor_2024, retro_ggor_2062, retro_ggor_2128, retro_ggor_2201, retro_ggor_2301, retro_ggor_2360, retro_ggor_2407, retro_ggor_2462, retro_ggor_2468, retro_ggor_2653, retro_ggor_2815, retro_ggor_2823, retro_ggor_2903, retro_ggor_2941, retro_ggor_3069, retro_ggor_455, retro_ggor_685, retro_ggor_692, retro_ggor_881, retro_ggor_898,
Macropus eugenii ENSMEUG00000012262 ortholog_one2one 14 retrogenes
retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus ENSMLUG00000022439 ortholog_one2many 8 retrogenes
retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta ENSMMUG00000031911 possible_ortholog 4 retrogenes
retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo ENSMPUG00000006369 ortholog_one2many 2 retrogenes
retro_mputfur_1591, retro_mputfur_171,
Mus musculus ENSMUSG00000023043 ortholog_one2one 2 retrogenes
retro_mmus_1152, retro_mmus_479,
Oryctolagus cuniculus ENSOCUG00000027691 ortholog_one2many 1 retrogene
retro_ocun_58,
Pongo abelii ENSPPYG00000004563 possible_ortholog 60 retrogenes
retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Pteropus vampyrus ENSPVAG00000009361 ortholog_one2one 2 retrogenes
retro_pvam_140, retro_pvam_557,
Rattus norvegicus ENSRNOG00000047393 ortholog_one2many 3 retrogenes
retro_rnor_1513, retro_rnor_2529, retro_rnor_581,
Tursiops truncatus ENSTTRG00000012977 ortholog_one2one 2 retrogenes
retro_ttru_1273, retro_ttru_463,
Vicugna pacos ENSVPAG00000007421 ortholog_one2one 3 retrogenes
retro_vpac_287, retro_vpac_390, retro_vpac_53,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1288 77.33 53.22
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2. retro_itri_1517 67.16 62.53
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3. retro_itri_1609 54.32 56.56
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Download FASTA sequences of all ENSSTOG00000015587 retrocopies