RetrogeneDB ID: | retro_pabe_3702 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:128145449..128146461(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 76.02 % |
Parental protein coverage: | 79.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTVDNARIVLQIDNARLA |
LASYLDRVR.LE.EN...ESKIR..LEK.G..V.DW.HYFK..ED.RAQIFAN.VD...I.LQIDNA.LA | |
Retrocopy | LASYLDRVRGLESENQKQESKIRDRLEK-GS*VTDWGHYFKTLEDWRAQIFANSVDSTHIILQIDNAHLA |
Parental | ADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIAS |
.DDFRVKY..ELAM.QSVE.DIHGLRK..DDT.VT.LQLETEIEALKEELLFMK..HEEEVKGL.AQI.S | |
Retrocopy | VDDFRVKYDIELAMHQSVESDIHGLRKLTDDTSVTWLQLETEIEALKEELLFMK-HHEEEVKGLKAQITS |
Parental | SGLTVEVDAPKSQDLAKI-MADIRAQYDELARKNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTEL |
SGLT.E..APKSQDL.KI...D..AQYDELA.KN..ELD.YWSQQIEESTTVVT.Q.AE...A...LT.L | |
Retrocopy | SGLTMELNAPKSQDLYKI<QTDTWAQYDELAQKNPKELDMYWSQQIEESTTVVTKQAAEIRVAQMILT*L |
Parental | RRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESELAQTRAEGQRQAQEYEALLNI |
R.TVQSLEIDLDSMRN.K.SLENSLRE.EA.Y..QM.QL.G.LLHLESELAQTRAEGQ.QAQEYEALLNI | |
Retrocopy | RHTVQSLEIDLDSMRNPKSSLENSLREAEAHYTMQMKQLSGVLLHLESELAQTRAEGQQQAQEYEALLNI |
Parental | KVKLEAEIATYRRLLEDG-EDFNLGDALDSSNSMQTIQKTTTRRIVDGKVVSETNDTKVLRH |
KVKLEAEI.TY..L.E.G..DFNLGDAL.SSN.MQTIQKTTTR.IVD.KVV.ETN.T.VL.H | |
Retrocopy | KVKLEAEITTYHYLGEEG<KDFNLGDALYSSNFMQTIQKTTTRGIVDHKVVPETNETRVLKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4756 |
Pan troglodytes | retro_ptro_3169 |
Callithrix jacchus | retro_cjac_4120 |