RetrogeneDB ID: | retro_cpor_111 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:39273071..39274370(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000009115 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000002618 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.31 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSVTTRSTTFSTNYRSLGSVRGPSHRVGRASSAASVYAGAGGSGSRVSMSRSTILRGDMASAGLAAGMAG |
M.VTTRSTTFSTNYRSLGSVRGPSHRVGRASSAASVYAGAGGSGSRVSMSRSTILRGDMASAGLAAGMAG | |
Retrocopy | MCVTTRSTTFSTNYRSLGSVRGPSHRVGRASSAASVYAGAGGSGSRVSMSRSTILRGDMASAGLAAGMAG |
Parental | GLAGMGSIQTEKETMQDLNDRLASYLDRVRSLETENRRLEGKIREHLEKKGAQVRDWGHYFKTIEELKAQ |
GLAGMGSIQTEKETMQDLNDRLASYLDRVRSLETENRRLEGKIREHLEKKGAQVRDWGHYFKTIEELKAQ | |
Retrocopy | GLAGMGSIQTEKETMQDLNDRLASYLDRVRSLETENRRLEGKIREHLEKKGAQVRDWGHYFKTIEELKAQ |
Parental | IFDNSVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIETLKEE |
IFDNSVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIETLKEE | |
Retrocopy | IFDNSVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIETLKEE |
Parental | LIFMKKNHEEEVRSLQAQIAGSGLTVEVDAPKSQDLGKIMADIRAQYDALAQKNREELDKYWSQQIEEST |
LIFMKKNHEEEVRSLQAQIAGSGLTVEVDAPKSQDLGKIMADIRAQYDALAQKNREELDKYWSQQIEEST | |
Retrocopy | LIFMKKNHEEEVRSLQAQIAGSGLTVEVDAPKSQDLGKIMADIRAQYDALAQKNREELDKYWSQQIEEST |
Parental | TVVTSQSAEVGAAEMTLTELRRTVQTLELDLESLRNTKINLENNLRDLEARYAMQMEQLNGVLLHLESEL |
TVVTSQSAE.GAAEMTLTELRRTVQTLELDLESLRNTKINLENNLRDLEARYAMQMEQLNGVLLHLESEL | |
Retrocopy | TVVTSQSAEAGAAEMTLTELRRTVQTLELDLESLRNTKINLENNLRDLEARYAMQMEQLNGVLLHLESEL |
Parental | AQTRTEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSSTSVQTIQRTTTRKIVDGKL |
AQTRTEGQRQAQEYEALLNIKVKLEAEIATY.RLLEDGEDFNLGDALDSSSTSVQTIQRTTTRKIVDGKL | |
Retrocopy | AQTRTEGQRQAQEYEALLNIKVKLEAEIATYHRLLEDGEDFNLGDALDSSSTSVQTIQRTTTRKIVDGKL |
Parental | VSETNDTKVLRH |
VSETNDTKVLRH | |
Retrocopy | VSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .57 RPM |
SRP017611_liver | 0 .44 RPM | 55 .10 RPM |
SRP040447_lung | 0 .38 RPM | 71 .90 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .09 RPM |