RetrogeneDB ID: | retro_itri_1609 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393571.1:1007869..1008581(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSSTOG00000015587 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 54.32 % |
Parental protein coverage: | 56.56 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | SVESDIHGLRKVIDDTNITRLQLETEIETLKEELL-FMKKNHEEEVKGLQAQIANSGLTVEVDAPKSQDL |
S..SDI.G...VI.D.NIT.LQLET.IE.LKEELL.FMKKNHEE.......Q...S.L.V..D.PK..DL | |
Retrocopy | SAQSDICGPYRVINDINITQLQLETGIEALKEELL>FMKKNHEEKGRSSEPQSDSSWLIVKIDVPKYHDL |
Parental | -SKIMADIRA-QYDELAQKNREELDKYWSQQIEESTTVVTSQTAEIGAAEITLTELRRTV-QSLEIDLDS |
...IM.DIR..QY.ELA.K....LDKY..Q.IEESTTVV.S....IG.A.....ELR.T...SLEI.LD. | |
Retrocopy | VDRIMVDIRG>QYEELAHKIQDNLDKY*PQKIEESTTVVRSSSS*IGTAKVMFIELRNTA>WSLEINLDC |
Parental | MRNLKASLENSLREVEARYSMQMEQLNG-VLLH-LESELAQTRAEGQRQTQDYEALLNIKVKLEAEIATY |
..NLKASLE..LR..EA.YSM.MEQ..G.VL.H.LE.ELA..R............L..IKVKL.AE..TY | |
Retrocopy | G*NLKASLEHRLRNMEAYYSMKMEQFSG<VLMH<LEPELAKIRSXXXXXXXXXXXL-SIKVKL*AEMTTY |
Parental | RRLLEDGEDFSLNDALDSSNSMQTIQKTTTRRI |
...L....D.SLN..LDSS.SM.T.QK.TT... | |
Retrocopy | CCMLKG*KDLSLNNTLDSSTSMGTTQKITTTNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |