RetrogeneDB ID: | retro_pabe_1020 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 13:92202327..92203295(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 82.1 % |
Parental protein coverage: | 75.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTVDNARIVLQIDNARLAADDFRVKYETELAMRQS |
L.SK.REHLEKKGPQ.RDWSHYFK.IE.L.AQIFAN.V.................D.RVKYETELAM.QS | |
Retrocopy | LKSKVREHLEKKGPQRRDWSHYFKTIEELSAQIFANIVXXXXXXXXXXXXXXXXXDLRVKYETELAMHQS |
Parental | VENDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAK |
VE.DIHGL.KV.DDTNVTRLQLETEIEALKEELLFMKKN.EEEVKGLQAQ..SSGLT.EV..PKSQDL.K | |
Retrocopy | VESDIHGLCKVTDDTNVTRLQLETEIEALKEELLFMKKNYEEEVKGLQAQTDSSGLTMEVEVPKSQDLTK |
Parental | IMADIR-AQYDELARKNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNL |
IMADIR.AQYDELA.KNREELDKYWSQQIEESTTVV.TQSAEVGAAE.TLTELR.TV.SLEIDLDSMRNL | |
Retrocopy | IMADIR<AQYDELAGKNREELDKYWSQQIEESTTVVITQSAEVGAAEITLTELRHTV*SLEIDLDSMRNL |
Parental | KASLENSLREVEARYALQMEQLNGILLHLESELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLED |
KASLENSLREV.A.YALQM.QLN.ILLHLESELAQT.AEGQRQAQEYE.LLNIKVKLEAEIATY...LED | |
Retrocopy | KASLENSLREVKACYALQMGQLNAILLHLESELAQTQAEGQRQAQEYETLLNIKVKLEAEIATYHSPLED |
Parental | GEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVVSETNDTKVLRH |
GE.FN.GDALDSS.SMQT.QK.TT.RIVD.KVVSETNDTKVLRH | |
Retrocopy | GENFNHGDALDSSSSMQTNQKSTTCRIVDDKVVSETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1226 |
Pan troglodytes | retro_ptro_841 |