RetrogeneDB ID: | retro_pabe_2822 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5_random:8578134..8579101(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 83.9 % |
Parental protein coverage: | 74.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGGLA |
FTTR.TFSTNYRSLGSVQ.PSYGA.PVSS.ASVYAGAGGSGS.IS.S.ST.F.G..GSGGLA.G.AGGL. | |
Retrocopy | FTTRFTFSTNYRSLGSVQPPSYGAQPVSSTASVYAGAGGSGSQISLSHSTNFQGSLGSGGLAAGLAGGLE |
Parental | GMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFA |
.MGGIQNEKETMQSLND.LASYLDRVR..ETEN..LE.KIREHLEKKGPQVRDW.HYFK.IE.LR.QIFA | |
Retrocopy | RMGGIQNEKETMQSLNDCLASYLDRVRNRETENQKLENKIREHLEKKGPQVRDWGHYFKTIEELRTQIFA |
Parental | NTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEELLF |
NTVDNA.IVLQI.NA.LAADDFRVKYET.LAMRQSVE..IHGL.KV.DDTNVTRLQLETEIEALKEELLF | |
Retrocopy | NTVDNAHIVLQINNAHLAADDFRVKYETGLAMRQSVESHIHGLHKVTDDTNVTRLQLETEIEALKEELLF |
Parental | MKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEESTTVV |
MKKNH.EEVKGLQAQIASSGL.VEVDAPKSQ.L.KIMADI.A.Y.ELA.KN.EELDKY.SQQ.EESTTVV | |
Retrocopy | MKKNHKEEVKGLQAQIASSGLAVEVDAPKSQNLTKIMADIWAHYKELAWKNQEELDKY*SQQTEESTTVV |
Parental | TTQSAEVGAAETTLT-ELRRTVQSLEIDLDSMRNLKASLENSL |
TTQSAEV.AAE.T...E.R.T.QSLEIDLDSMRNLKASLENSL | |
Retrocopy | TTQSAEVEAAEVTIN>EPRLTIQSLEIDLDSMRNLKASLENSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |