RetrogeneDB ID: | retro_cfam_1205 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 26:14906167..14906931(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007154 | ||
Aliases: | KRT18, CK18 | ||
Description: | None |
Percent Identity: | 83.2 % |
Parental protein coverage: | 56.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | PSRPPALPPSSMSFTARSTFSSNYRSLGSVQAPSHRVRPIS-SSA-ASVYA-GAGGSGSR-ISVSRSTSF |
P...P...P.SMSFT..STFSSNY.SLGS.Q.PSH..RPIS.S.A.AS..A.GA...GS..ISVS.STSF | |
Retrocopy | PPESPSCSPNSMSFTTCSTFSSNYQSLGSMQSPSHQDRPISSSAA>ASMQAWGARAPGSL>ISVSHSTSF |
Parental | RGGWGSGGLAAGMAGGLAGIGGIQGEKETMQDLNDRLASYLEKVRSLEADNQRLEMKIREHLEKKGPQVR |
RG.WGSGG.A.GMAG.LA.I..IQ.EKETMQDLND.LASYLEKVRSLEADNQRLEMKIREHLEKKGPQVR | |
Retrocopy | RGSWGSGGPATGMAGALASIEHIQSEKETMQDLNDHLASYLEKVRSLEADNQRLEMKIREHLEKKGPQVR |
Parental | DWGHYFKTIEDLRAQIFASAVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDTNV |
DWGHYFKTIEDLRAQIFASAVDNA.IVLQIDNA.LAADDF.VKYE.ELAMRQSVESDIHGL.KVIDDTNV | |
Retrocopy | DWGHYFKTIEDLRAQIFASAVDNA*IVLQIDNAWLAADDF*VKYEMELAMRQSVESDIHGLHKVIDDTNV |
Parental | TRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIANSGLTVELDAP |
TRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIANSG..VELD.P | |
Retrocopy | TRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIANSGVMVELDMP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .46 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 93 .18 RPM |
SRP017611_liver | 0 .15 RPM | 367 .28 RPM |