RetrogeneDB ID: | retro_pabe_956 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:106730369..106731647(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 85.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MNFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFR-GGMGSGGLATGIAG |
MNFTTRSTFSTNY.SLGSVQAPSYG..PVSSAASVYAG..GSGS.ISVS...SFR.G.M.S.GLA...AG | |
Retrocopy | MNFTTRSTFSTNYWSLGSVQAPSYGTWPVSSAASVYAGSRGSGSWISVSCFISFR<GCMESRGLAVEMAG |
Parental | GLAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQ |
GLAGMGGIQNEKETMQSLND.L.SYLDRVRSLET.N..LESKIREHLEKKGPQVRDWSHYFKII.DLRAQ | |
Retrocopy | GLAGMGGIQNEKETMQSLNDCLDSYLDRVRSLETKNQKLESKIREHLEKKGPQVRDWSHYFKIIDDLRAQ |
Parental | IFANTVDNARIVLQID-NARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKE |
IFANTVDNA.IVLQID.N..LAADDFRVKYETELAM......DIHGL.KVI.DTNVTRLQLETEIEALKE | |
Retrocopy | IFANTVDNACIVLQID>NVCLAADDFRVKYETELAMA----HDIHGLCKVIVDTNVTRLQLETEIEALKE |
Parental | ELLFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQ-IEE |
ELLF.KKNH.EEVKGLQAQIASSGLT.EVDA.KSQDLAKIMADI.AQYDELARKN.E.LDKYWSQ..IEE | |
Retrocopy | ELLFIKKNHKEEVKGLQAQIASSGLTMEVDALKSQDLAKIMADIWAQYDELARKNQEGLDKYWSQK>IEE |
Parental | STTVVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLES |
.T.VVTTQ..EVGA.E.TLTELRRT.QSLE.DLDSMRNLKASLE.SLREVEAR.ALQMEQLNGILLHLES | |
Retrocopy | ITKVVTTQPTEVGATEMTLTELRRTLQSLEVDLDSMRNLKASLEDSLREVEARHALQMEQLNGILLHLES |
Parental | ELAQTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTT-RRIVDG |
ELAQT..EGQRQAQEYEALLNIKVKL.AEI.TY..L.EDG..FNLGDALDSSNSMQTIQKTTT.RRIVDG | |
Retrocopy | ELAQTLEEGQRQAQEYEALLNIKVKLGAEIDTYPCLGEDGKEFNLGDALDSSNSMQTIQKTTT<RRIVDG |
Parental | KVVSETNDTKVLRH |
KV.SET.DTKVLRH | |
Retrocopy | KVLSETKDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .00 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1153 |
Pan troglodytes | retro_ptro_787 |
Gorilla gorilla | retro_ggor_898 |