RetrogeneDB ID: | retro_amel_1366 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193254.1:666860..667683(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000011981 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.65 % |
Parental protein coverage: | 61.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | IDNARLAAE--DFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEV |
.DNA.LAA...DFRVKYETELAM.QSV.NDIHGL.KV.DD.N.TRLQLETE.EAL.E.LLFMK.NHEEEV | |
Retrocopy | VDNAHLAADNDDFRVKYETELAMHQSV-NDIHGLCKVTDDSNATRLQLETETEALEEGLLFMK-NHEEEV |
Parental | KGLQ-NQIANSGLTVELDAPKSQDLSKIMADIR-AQYDELAQKNREELDKYWSQQIEESTTVVTTQTAEI |
KGLQ.N..AN.GLT.ELDAPK.QDL.KI.ADIR.AQ.DELAQ...EELDKYWSQQ.EESTTVVT.QTAEI | |
Retrocopy | KGLQ<NRTANPGLTKELDAPKPQDL-KITADIR<AQCDELAQRS*EELDKYWSQQTEESTTVVTSQTAEI |
Parental | GEAEMTLTELRRTAQSLEIN-LDSMRNLKASLENSLREVETRYVMQMEQLNG-VLLHLESELSQTRAEGQ |
G.AEMTLTELR.TAQ..EI..LD..RNLKASLENSLRE.E.RY.M..EQL.G.VLLH.ESELSQT.AE.Q | |
Retrocopy | GAAEMTLTELRHTAQFWEIS<LDLLRNLKASLENSLREGEARYTMPTEQLHG<VLLHVESELSQTGAEAQ |
Parental | RQAQEYEALLNVKVKLEAEIATYRRLLEDGEDFSL-TDALDSSSSIQTIQKTTTRRIVDGKVVSETNDTK |
.Q.QE..ALL..KV.LEAEIA.Y..LLE.GE.F....D.LDSS.S.QTIQKTTT.RI.DG..VSETND.K | |
Retrocopy | CQTQEHLALLRIKVRLEAEIAAYCCLLENGEHFCV<RDILDSSNSLQTIQKTTTCRIEDGDTVSETNDPK |
Parental | VLRR |
VLRR | |
Retrocopy | VLRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |