RetrogeneDB ID: | retro_cfam_1413 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 30:37591052..37591885(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000007154 | ||
Aliases: | KRT18, CK18 | ||
Description: | None |
Percent Identity: | 84.64 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LSPG-LPSRPPALPPSSMSFTARSTFSSNYRSLGSVQAPSHRVRPISSSAASVYAGAGGSGSRISVSRST |
LSPG.LP..P....P.SMSFT..STFSSN..SLGS.Q.PSHRV..ISSS.ASVYAGAGGSGS.ISVS.ST | |
Retrocopy | LSPG<LPVSP-SYSPNSMSFTTCSTFSSNDQSLGSRQSPSHRVQTISSSVASVYAGAGGSGS*ISVSCST |
Parental | SFRGGWGSGGLAAGMAGGLAGIGGIQGEKETMQDLNDRLASYLEKVRSLEADNQRLEMKIREHLEKKGPQ |
SF.GGWGSGG.AAGM.GGLAGI.GIQGEKETMQDLND.LASYLE..RSLEAD.Q.LEMK.REHLEKKGPQ | |
Retrocopy | SFQGGWGSGGPAAGMGGGLAGIEGIQGEKETMQDLNDHLASYLERGRSLEADDQKLEMKTREHLEKKGPQ |
Parental | VRDWGHYFKTIEDLRAQIFASAVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDT |
VRDWGHYFKTIEDLRAQIFASAVDNA.I.LQIDNARLAADDF.VKYE.E.AM.QSVESDIH.L.KVIDDT | |
Retrocopy | VRDWGHYFKTIEDLRAQIFASAVDNACIILQIDNARLAADDF*VKYEMEVAMHQSVESDIHRLCKVIDDT |
Parental | NVTRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIANSGLTVELDAPKSQDLSKIMADIRAQYDELAQK |
NVT.LQLETEIEALKEELLF.KKNHEEEVK.L.NQI.NSGLTVELDAP.SQDLSKIMADIRAQYDELAQK | |
Retrocopy | NVTGLQLETEIEALKEELLFTKKNHEEEVKDL*NQIVNSGLTVELDAPTSQDLSKIMADIRAQYDELAQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .25 RPM | 0 .46 RPM |
SRP017611_brain | 0 .24 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .07 RPM | 93 .18 RPM |
SRP017611_liver | 0 .00 RPM | 367 .28 RPM |