RetrogeneDB ID: | retro_pabe_1130 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:71674798..71675586(+) | ||
Located in intron of: | ENSPPYG00000005954 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 81.34 % |
Parental protein coverage: | 62.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTVDNARIVLQIDNARLA |
LASYLDRVR.LETEN.RLESKI.EH..KKGPQVRDW.HYFK.IEDLRAQIF.NTVDNA.IVLQIDNA.LA | |
Retrocopy | LASYLDRVRRLETENQRLESKIQEHPDKKGPQVRDWGHYFKTIEDLRAQIFSNTVDNAHIVLQIDNAHLA |
Parental | ADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEVK-GLQAQIA |
AD..RVKYETELAM.QSVE..IHGL.KV..DTNVTRLQL.TEIEALK.ELLFMK.N.EEEVK.GLQAQ.A | |
Retrocopy | AD--RVKYETELAMYQSVESNIHGLCKV-NDTNVTRLQLQTEIEALKKELLFMK-NREEEVK<GLQAQTA |
Parental | SSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEESTTVVTTQSAEVGAAETTLTEL |
SSGLT..VD.PKSQDLAKI..DI.A.Y.ELA.KN.EELDKYWSQQ.EE.TTVVT.QSA.VGAAE.TLTEL | |
Retrocopy | SSGLTMKVDTPKSQDLAKITGDIWA*YEELAQKN*EELDKYWSQQTEEGTTVVTMQSAKVGAAEVTLTEL |
Parental | RRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESELAQTRAEGQ |
R.TVQSLE.DLDS.RNLKASLENSLREVEA.YALQMEQLN.IL..LE.ELAQ..AE.Q | |
Retrocopy | RGTVQSLETDLDSIRNLKASLENSLREVEACYALQMEQLNRILPYLELELAQAGAERQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .12 RPM | 6 .20 RPM |
SRP007412_heart | 0 .03 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .17 RPM | 50 .15 RPM |
SRP007412_liver | 0 .15 RPM | 198 .51 RPM |