RetrogeneDB ID: | retro_mmul_279 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:162346986..162348279(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000009417 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000031911 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSFTTRSTFSTNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLASGMAGG |
.SFTTRSTFSTNYRSLGSVQAPSYG..PVSSAASVYA.A.GSGSRISVSRSTS.RGGM.SGGLASGMAGG | |
Retrocopy | ISFTTRSTFSTNYRSLGSVQAPSYGTPPVSSAASVYASARGSGSRISVSRSTSLRGGMRSGGLASGMAGG |
Parental | LAGMGGIQNEKETMQSLNDRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI |
LAGMGGIQNEKETMQSLN..LASYLDRV.SLE.EN..LESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI | |
Retrocopy | LAGMGGIQNEKETMQSLNECLASYLDRVKSLEMENGKLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQI |
Parental | FANTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEEL |
FANTVDNARIVLQIDNA..AADDFRVKYETELAMRQSVE.DIHGL.KVIDDTNVTR.QLETEIEALKEEL | |
Retrocopy | FANTVDNARIVLQIDNACFAADDFRVKYETELAMRQSVEKDIHGLHKVIDDTNVTRVQLETEIEALKEEL |
Parental | LFMKKNHEEEVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNREELDKYWSQQIEESTT |
LFMKKNHEEEVKGLQAQIASSGL.VEVDAPKSQDLAKIMADI.AQYDELARKNREELDKYWSQQ.EESTT | |
Retrocopy | LFMKKNHEEEVKGLQAQIASSGLIVEVDAPKSQDLAKIMADIWAQYDELARKNREELDKYWSQQTEESTT |
Parental | VVTTQSAEVGAAETTLTELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESELA |
VVTTQSAEVGAAETTLTELR.TVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESE.A | |
Retrocopy | VVTTQSAEVGAAETTLTELRGTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESEMA |
Parental | QTRAEGQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEEFNLGDALDSSNSMQTIQKTTTRRIVDGKVVS |
QTRAE.QRQAQEYEALLNIKVKLEAEIATYRRLLEDGEEFNLGDALDSSNSMQTIQKTTTR.IVDGKV.S | |
Retrocopy | QTRAERQRQAQEYEALLNIKVKLEAEIATYRRLLEDGEEFNLGDALDSSNSMQTIQKTTTRQIVDGKVMS |
Parental | ETNDTKVLRH |
ETNDTKVLRH | |
Retrocopy | ETNDTKVLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .34 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .95 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .94 RPM |
SRP007412_heart | 0 .00 RPM | 1 .30 RPM |
SRP007412_kidney | 0 .12 RPM | 19 .60 RPM |
SRP007412_liver | 0 .00 RPM | 49 .60 RPM |
SRP007412_testis | 0 .00 RPM | 0 .49 RPM |