RetrogeneDB ID: | retro_pabe_934 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:65497762..65499026(-) | ||
Located in intron of: | ENSPPYG00000004735 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSPPYG00000004563 | ||
Aliases: | None | ||
Description: | keratin 18 [Source:HGNC Symbol;Acc:6430] |
Percent Identity: | 81.13 % |
Parental protein coverage: | 97.67 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TNYRSLGSVQAPSYGARPVSSAASVYAGAGGSGSRISVSRSTSFRGGMGSGGLATGIAGGLAGMGGIQNE |
T.Y.SLGS.Q.PSYG..PVSS....YAG.GGSGSRIS.S.STSFRG..GS..LA.G.A.GLAGMGGIQNE | |
Retrocopy | TTYPSLGSIQVPSYGIWPVSSTTNIYAGTGGSGSRISMSCSTSFRGCLGSRELARGMARGLAGMGGIQNE |
Parental | KETMQSLN-DRLASYLDRVRSLETENRRLESKIREHLEKKGPQVRDWSHYFKIIEDLRAQIFANTVDNAR |
KETMQSL..DRLASYLDRVRS..T.N...ESKI.EHLEK.GPQVRDW.HYFK.I.DLRAQIF.NTVDN.. | |
Retrocopy | KETMQSLK<DRLASYLDRVRSPDTKNWKVESKIWEHLEKTGPQVRDWVHYFKTIKDLRAQIFTNTVDNVH |
Parental | IVLQIDNARLAADDFRVKYETELAMRQSVENDIHGLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEE |
IVLQI.NA.LAADDFRVKY.TELA..QSVENDI.GL.KVIDDTNVTRLQL.TEIE.LKEELL.MKKNHEE | |
Retrocopy | IVLQINNAHLAADDFRVKYDTELATCQSVENDICGLCKVIDDTNVTRLQLKTEIETLKEELLLMKKNHEE |
Parental | EVKGLQAQIASSGLTVEVDAPKSQDLAKIMADIRAQYDELARKNRE-ELDKYWSQQIEESTTVVTTQSAE |
EVKGLQAQI.SSGL.VEVDAPKSQDLAKIMADI.AQYDELARKN.E..LDKYWS.QI.ESTTVVT.Q.A. | |
Retrocopy | EVKGLQAQIVSSGLIVEVDAPKSQDLAKIMADIWAQYDELARKN*E<RLDKYWSRQIKESTTVVTMQLAK |
Parental | VGAAETTLT--ELRRTVQSLEIDLDSMRNLKASLENSLREVEARYALQMEQLNGILLHLESELAQTRAEG |
VGA.E.TL...EL..TVQSLEIDLDSMRNLKASLENSLREVEA.Y.LQMEQLNGILLHLE.E...TRAEG | |
Retrocopy | VGAVEMTLSTDEL*HTVQSLEIDLDSMRNLKASLENSLREVEAWYTLQMEQLNGILLHLELEWT*TRAEG |
Parental | QRQAQEYEALLNIKVKLEAEIATYRRLLEDGEDFNLGDALDSSNSMQTIQKTTTRRIVDGKVVSETNDTK |
Q.QAQE.EALLNIKVKLEAEIATY..L.ED..DFNLGDA.DSSNSMQTIQKTTTR.IV.GKVVSETNDTK | |
Retrocopy | QHQAQE*EALLNIKVKLEAEIATYHCLPEDIKDFNLGDASDSSNSMQTIQKTTTRQIVNGKVVSETNDTK |
Parental | VLRH |
VLRH | |
Retrocopy | VLRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 6 .20 RPM |
SRP007412_heart | 0 .09 RPM | 1 .29 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .15 RPM |
SRP007412_liver | 0 .00 RPM | 198 .51 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1129 |
Pan troglodytes | retro_ptro_677 |
Gorilla gorilla | retro_ggor_881 |