RetrogeneDB ID: | retro_cjac_1457 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 16:27300335..27301510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT18 | ||
Ensembl ID: | ENSCJAG00000018165 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.67 % |
Parental protein coverage: | 95.59 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RSLSPVLSLSS-PGSMSFTTRSSFSTNYRSVGSVRVPSYGARPVSSAA-SVYAGAGGSGSRVSVTRSTSV |
.SLS.VLSLSS..GSMSFTT.S.FSTNY.S.G.V.VPSY.A.PVSSAA.SV.AGA.GSGSR.S...STS. | |
Retrocopy | QSLSLVLSLSS>GGSMSFTTGSTFSTNYQSLGLVQVPSYSACPVSSAA>SVFAGARGSGSRISTSHSTSF |
Parental | RSGMGVGGLAAGMARGLAGMGGIQNEKETMQILNDRLASYLDRVRSLETENRKLEIKIREHLEKKGPQVR |
..GMG..GLA.GMARGLAGM.GIQNE.ETMQ.LND.LASYLDRVRS.ET.N..LE.KI.EHLEKKGPQVR | |
Retrocopy | QCGMGSRGLATGMARGLAGMRGIQNE-ETMQSLNDHLASYLDRVRSPETKNLQLEHKIQEHLEKKGPQVR |
Parental | DWGHYFKTIEDLRAQIFSNTVDNARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVIDDTNV |
.W.HYFKT..DLRAQIF.NTVDN..IVLQIDN..LAAD.F.VKY.T.LAM..S.ES.IH.LRK..DDT.V | |
Retrocopy | AWSHYFKTV-DLRAQIFTNTVDNTCIVLQIDNEGLAADGF*VKYQTKLAMCLSMESHIHRLRKATDDTIV |
Parental | TRLQLETEIEALKEELLFMKKNHEEEVNGLQAQIASSGLTVEVDTPKSQDLAKIMAEIRAQYDELARKNR |
T.LQL.TE.EALKEELLFMKKNHE.E..G.QAQIASSGLT.EVDTPKSQDLAKIMA..RAQ.D.LA.KN. | |
Retrocopy | TGLQLQTEVEALKEELLFMKKNHEVEAKGQQAQIASSGLTMEVDTPKSQDLAKIMADSRAQNDKLAWKN* |
Parental | EELDKYWTQLIEESTTIVTTQSTEVETAGMTLTELRRTVQS-LEIDLD--SMRNTKISLENSLREVEARY |
.ELDK...Q.IEE.TT.VTTQS..V..A.M...ELR.TV...LEID.......N.K.SLENSLREVEARY | |
Retrocopy | QELDKCLSQQIEENTTVVTTQSAKVGAAEMMRMELRHTVHYVLEIDWTP*EIGNLKASLENSLREVEARY |
Parental | ALQMEQLNGILLHLESELAQTRAEGQRQAQEYEALLNIKVKLEAE |
ALQMEQL.GILLHL.SELAQT.AEGQ.QAQEY.ALLNIKVKLEA. | |
Retrocopy | ALQMEQLKGILLHLASELAQTWAEGQHQAQEYQALLNIKVKLEAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 101 .02 RPM |
SRP051959_heart | 0 .00 RPM | 1 .18 RPM |
SRP051959_kidney | 0 .00 RPM | 16 .24 RPM |
SRP051959_liver | 0 .02 RPM | 37 .95 RPM |
SRP051959_lung | 0 .00 RPM | 14 .41 RPM |
SRP051959_lymph_node | 0 .00 RPM | 0 .66 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .04 RPM |
SRP051959_spleen | 0 .00 RPM | 1 .24 RPM |