RetrogeneDB - Parental gene ENSGGOG00000010157 details

							
>ENSGGOG00000010157
CTGAGTCCTGTCCTTTCTCTCTCCCCGGACAGCATGAGCTTCACCACTCGCTCCACCTTCTCCACCAACTACCGGTCCCT

GGGCTCTGTCCAGGCGCCCAGCTACGGCGCCCGGCCGGTCAGCAGCGCGGCCAGCGTCTATGCAGGCGCTGGGGGCTCTG

GTTCCCGGATCTCCGTGTCCCGCTCCACCAGCTTCAGGGGCGGCATGGGGTCCGGGGGCCTGGCCACGGGGATAGCCGGG

GGTCTGGCAGGAATGGGAGGCATCCAGAACGAGAAGGAGACCATGCAAAGCCTGAACGACCGCCTGGCCTCTTACCTGGA

CAGAGTGAGGAGCCTGGAGACCGAGAACCGGAGGCTGGAGAGCAAAATCCGGGAGCACTTGGAGAAGAAGGGACCCCAGG

TCAGAGACTGGAGCCATTACTTCAAGATCATCGAGGACCTGAGGGCTCAGATCTTCGCAAATACTGTGGACAATGCCCGC

ATCGTTCTGCAGATTGACAATGCCCGTCTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCATGCGCCA

GTCTGTGGAGAACGACATCCATGGGCTCCGCAAGGTCATTGATGACACCAATATCACACGACTGCAGCTGGAGACAGAGA

TCGAGGCTCTCAAGGAGGAGCTGCTCTTCATGAAGAAGAACCACGAAGAGGAAGTAAAAGGCCTACAAGCCCAGATTGCC

AGCTCTGGGTTGACCGTGGAGGTAGATGCCCCCAAATCTCAGGACCTCGCCAAGATCATGGCAGACATCCGGGCCCAATA

TGACGAGCTGGCTCGGAAGAACCGAGAGGAGCTAGACAAGTACTGGTCTCAGCAGATTGAGGAGAGCACCACAGTGGTCA

CCACACAGTCTGCCGAGGTTGGAGCTGCTGAGACAACGCTCACAGAGCTGAGACGTACAGTCCAGTCCTTGGAGATCGAC

CTGGACTCCATGAGAAATCTGAAGGCCAGCTTGGAGAACAGCCTGAGGGAGGTGGAGGCCCGCTACGCCCTACAGATGGA

GCAGCTCAACGGGATCCTGCTGCACCTTGAGTCAGAGCTGGCACAGACCCGGGCAGAGGGACAGCGCCAGGCCCAGGAGT

ATGAGGCCCTGCTGAACATCAAGGTCAAGCTGGAGGCTGAGATCGCCACCTACCGCCGCCTGCTGGAAGATGGCGAGGAC

TTTAATCTTGGTGATGCCTTGGACAGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTGGATGG

CAAAGTGGTGTCTGAGACCAATGACACCAAAGTTCTGAGGCATTAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	0 .67 RPM
SRP007412_cerebellum	3 .62 RPM
SRP007412_heart	0 .09 RPM
SRP007412_kidney	62 .11 RPM
SRP007412_liver	193 .56 RPM
SRP007412_testis	2 .80 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000011981	possible_ortholog	2 retrogenes	retro_amel_1366, retro_amel_1896,
Canis familiaris	ENSCAFG00000007154	possible_ortholog	10 retrogenes	retro_cfam_1045, retro_cfam_1205, retro_cfam_1393, retro_cfam_1413, retro_cfam_1672, retro_cfam_2124, retro_cfam_2170, retro_cfam_611, retro_cfam_698, retro_cfam_883,
Callithrix jacchus	ENSCJAG00000018165	ortholog_many2many	29 retrogenes	retro_cjac_1323, retro_cjac_1457, retro_cjac_1638, retro_cjac_1847, retro_cjac_1857, retro_cjac_1885, retro_cjac_1915, retro_cjac_2074, retro_cjac_2087, retro_cjac_2179, retro_cjac_2232, retro_cjac_2252, retro_cjac_2349, retro_cjac_2614, retro_cjac_2689, retro_cjac_2842, retro_cjac_3036, retro_cjac_3145, retro_cjac_3995, retro_cjac_4001, retro_cjac_4065, retro_cjac_4120, retro_cjac_4138, retro_cjac_4158, retro_cjac_4200, retro_cjac_626, retro_cjac_794, retro_cjac_878, retro_cjac_955,
Cavia porcellus	ENSCPOG00000002618	possible_ortholog	1 retrogene	retro_cpor_111,
Echinops telfairi	ENSETEG00000008130	possible_ortholog	1 retrogene	retro_etel_1177,
Homo sapiens	ENSG00000111057	ortholog_one2one	60 retrogenes	retro_hsap_1129, retro_hsap_1153, retro_hsap_1226, retro_hsap_1404, retro_hsap_1650, retro_hsap_1774, retro_hsap_1818, retro_hsap_1907, retro_hsap_1981, retro_hsap_2115, retro_hsap_2174, retro_hsap_2242, retro_hsap_2276, retro_hsap_2353, retro_hsap_2361, retro_hsap_2433, retro_hsap_2461, retro_hsap_2517, retro_hsap_2543, retro_hsap_2565, retro_hsap_2571, retro_hsap_2626, retro_hsap_2752, retro_hsap_2848, retro_hsap_2869, retro_hsap_2877, retro_hsap_2915, retro_hsap_2922, retro_hsap_2973, retro_hsap_306, retro_hsap_3098, retro_hsap_3161, retro_hsap_3203, retro_hsap_3227, retro_hsap_3236, retro_hsap_327, retro_hsap_3400, retro_hsap_3452, retro_hsap_3492, retro_hsap_3498, retro_hsap_3567, retro_hsap_3645, retro_hsap_3651, retro_hsap_3948, retro_hsap_4145, retro_hsap_4201, retro_hsap_4215, retro_hsap_4238, retro_hsap_4277, retro_hsap_434, retro_hsap_4681, retro_hsap_4727, retro_hsap_4736, retro_hsap_4756, retro_hsap_483, retro_hsap_4915, retro_hsap_4919, retro_hsap_832, retro_hsap_846, retro_hsap_866,
Macropus eugenii	ENSMEUG00000012262	ortholog_one2many	14 retrogenes	retro_meug_1392, retro_meug_1430, retro_meug_1461, retro_meug_1467, retro_meug_1631, retro_meug_1651, retro_meug_1810, retro_meug_2024, retro_meug_2082, retro_meug_2132, retro_meug_323, retro_meug_425, retro_meug_575, retro_meug_771,
Myotis lucifugus	ENSMLUG00000022439	possible_ortholog	8 retrogenes	retro_mluc_1247, retro_mluc_1248, retro_mluc_1758, retro_mluc_1876, retro_mluc_2179, retro_mluc_2234, retro_mluc_2420, retro_mluc_549,
Macaca mulatta	ENSMMUG00000031911	ortholog_one2many	4 retrogenes	retro_mmul_1601, retro_mmul_279, retro_mmul_91, retro_mmul_948,
Mustela putorius furo	ENSMPUG00000006369	possible_ortholog	2 retrogenes	retro_mputfur_1591, retro_mputfur_171,
Mus musculus	ENSMUSG00000023043	possible_ortholog	2 retrogenes	retro_mmus_1152, retro_mmus_479,
Nomascus leucogenys	ENSNLEG00000017732	ortholog_one2one	45 retrogenes	retro_nleu_1234, retro_nleu_1238, retro_nleu_1252, retro_nleu_1346, retro_nleu_1397, retro_nleu_1421, retro_nleu_1454, retro_nleu_1500, retro_nleu_1547, retro_nleu_1563, retro_nleu_1683, retro_nleu_1801, retro_nleu_1872, retro_nleu_1953, retro_nleu_1960, retro_nleu_2023, retro_nleu_2173, retro_nleu_2293, retro_nleu_2308, retro_nleu_2310, retro_nleu_241, retro_nleu_2494, retro_nleu_2551, retro_nleu_264, retro_nleu_2721, retro_nleu_2807, retro_nleu_2901, retro_nleu_2935, retro_nleu_3008, retro_nleu_3061, retro_nleu_353, retro_nleu_357, retro_nleu_364, retro_nleu_415, retro_nleu_427, retro_nleu_505, retro_nleu_512, retro_nleu_613, retro_nleu_639, retro_nleu_699, retro_nleu_785, retro_nleu_791, retro_nleu_824, retro_nleu_832, retro_nleu_924,
Oryctolagus cuniculus	ENSOCUG00000027691	possible_ortholog	1 retrogene	retro_ocun_58,
Pongo abelii	ENSPPYG00000004563	ortholog_one2one	60 retrogenes	retro_pabe_1020, retro_pabe_1130, retro_pabe_1161, retro_pabe_1399, retro_pabe_1486, retro_pabe_1487, retro_pabe_1522, retro_pabe_1552, retro_pabe_1628, retro_pabe_1751, retro_pabe_1809, retro_pabe_1852, retro_pabe_1870, retro_pabe_1890, retro_pabe_1893, retro_pabe_1942, retro_pabe_1966, retro_pabe_1991, retro_pabe_2060, retro_pabe_2128, retro_pabe_2134, retro_pabe_2145, retro_pabe_2174, retro_pabe_2278, retro_pabe_2335, retro_pabe_2359, retro_pabe_2376, retro_pabe_2381, retro_pabe_2427, retro_pabe_2431, retro_pabe_2465, retro_pabe_250, retro_pabe_2564, retro_pabe_2628, retro_pabe_2655, retro_pabe_2675, retro_pabe_2682, retro_pabe_2797, retro_pabe_2822, retro_pabe_2855, retro_pabe_2884, retro_pabe_2890, retro_pabe_290, retro_pabe_2992, retro_pabe_2998, retro_pabe_3252, retro_pabe_3400, retro_pabe_3401, retro_pabe_3437, retro_pabe_3448, retro_pabe_3464, retro_pabe_3488, retro_pabe_362, retro_pabe_3636, retro_pabe_3681, retro_pabe_3702, retro_pabe_374, retro_pabe_3824, retro_pabe_934, retro_pabe_956,
Pan troglodytes	ENSPTRG00000004996	ortholog_one2one	58 retrogenes	retro_ptro_1121, retro_ptro_1172, retro_ptro_1188, retro_ptro_1251, retro_ptro_1321, retro_ptro_1405, retro_ptro_1420, retro_ptro_1462, retro_ptro_1482, retro_ptro_1496, retro_ptro_1501, retro_ptro_1586, retro_ptro_1610, retro_ptro_1659, retro_ptro_1721, retro_ptro_1725, retro_ptro_1737, retro_ptro_1772, retro_ptro_1860, retro_ptro_193, retro_ptro_1941, retro_ptro_1946, retro_ptro_1971, retro_ptro_1977, retro_ptro_2010, retro_ptro_2094, retro_ptro_2188, retro_ptro_2244, retro_ptro_2277, retro_ptro_2310, retro_ptro_2341, retro_ptro_2366, retro_ptro_2371, retro_ptro_247, retro_ptro_2470, retro_ptro_2476, retro_ptro_264, retro_ptro_2679, retro_ptro_2817, retro_ptro_2852, retro_ptro_2861, retro_ptro_2881, retro_ptro_2900, retro_ptro_2956, retro_ptro_3079, retro_ptro_3110, retro_ptro_3144, retro_ptro_3150, retro_ptro_3169, retro_ptro_3277, retro_ptro_364, retro_ptro_581, retro_ptro_587, retro_ptro_600, retro_ptro_677, retro_ptro_787, retro_ptro_841, retro_ptro_962,
Pteropus vampyrus	ENSPVAG00000009361	possible_ortholog	2 retrogenes	retro_pvam_140, retro_pvam_557,
Rattus norvegicus	ENSRNOG00000047393	possible_ortholog	3 retrogenes	retro_rnor_1513, retro_rnor_2529, retro_rnor_581,
Ictidomys tridecemlineatus	ENSSTOG00000015587	possible_ortholog	3 retrogenes	retro_itri_1288, retro_itri_1517, retro_itri_1609,
Tursiops truncatus	ENSTTRG00000012977	possible_ortholog	2 retrogenes	retro_ttru_1273, retro_ttru_463,
Vicugna pacos	ENSVPAG00000007421	possible_ortholog	3 retrogenes	retro_vpac_287, retro_vpac_390, retro_vpac_53,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_ggor_455	84.39	99.77	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_ggor_685	73.21	88.21	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_ggor_692	82.10	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_ggor_881	79.43	95.24	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_ggor_898	85.81	100.00	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_ggor_1246	84.65	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_ggor_1513	84.68	100.00	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_ggor_1606	82.21	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_ggor_1641	81.41	70.29	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_ggor_1692	81.98	75.51	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_ggor_1725	74.74	85.94	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_ggor_1838	81.39	81.41	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_ggor_1914	85.44	83.45	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_ggor_2024	85.39	99.09	Please wait, loading	Please wait, loading	Please wait, loading
15.	retro_ggor_2062	80.36	100.00	Please wait, loading	Please wait, loading	Please wait, loading
16.	retro_ggor_2128	80.80	56.24	Please wait, loading	Please wait, loading	Please wait, loading
17.	retro_ggor_2201	81.65	73.92	Please wait, loading	Please wait, loading	Please wait, loading
18.	retro_ggor_2301	84.27	75.96	Please wait, loading	Please wait, loading	Please wait, loading
19.	retro_ggor_2360	77.05	98.87	Please wait, loading	Please wait, loading	Please wait, loading
20.	retro_ggor_2407	86.96	62.36	Please wait, loading	Please wait, loading	Please wait, loading
21.	retro_ggor_2462	87.13	100.00	Please wait, loading	Please wait, loading	Please wait, loading
22.	retro_ggor_2468	83.41	100.00	Please wait, loading	Please wait, loading	Please wait, loading
23.	retro_ggor_2653	80.73	67.80	Please wait, loading	Please wait, loading	Please wait, loading
24.	retro_ggor_2815	76.79	52.83	Please wait, loading	Please wait, loading	Please wait, loading
25.	retro_ggor_2823	75.88	89.34	Please wait, loading	Please wait, loading	Please wait, loading
26.	retro_ggor_2903	87.90	78.23	Please wait, loading	Please wait, loading	Please wait, loading
27.	retro_ggor_2941	84.29	62.81	Please wait, loading	Please wait, loading	Please wait, loading
28.	retro_ggor_3069	84.95	66.89	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSGGOG00000010157 retrocopies

Parental gene:	KRT18, ENSGGOG00000010157
Aliases:	None
Description:	None
Organism:	*Gorilla (Gorilla gorilla)*
Coordinates:	12:50964753..50968597(+)

Parental gene:

KRT18, ENSGGOG00000010157