RetrogeneDB ID: | retro_mmus_1152 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:117458290..117459075(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Krt18 | ||
Ensembl ID: | ENSMUSG00000023043 | ||
Aliases: | Krt18, CK18, K18, Krt1-18 | ||
Description: | keratin 18 [Source:MGI Symbol;Acc:MGI:96692] |
Percent Identity: | 86.69 % |
Parental protein coverage: | 61.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSFTTRSTTFSTNYRSLGSVRTPSQRVRPASSAASVYAGAGGSGSR-ISVSRSVWGGSVGSAGLAGMGGI |
MSFTTRSTTFSTNYRSLGSV.TPSQ.VRPASSAASVYAGAGGSGSR.ISVS.S..GGS.GS.GLAG.GGI | |
Retrocopy | MSFTTRSTTFSTNYRSLGSVSTPSQQVRPASSAASVYAGAGGSGSR<ISVSCSIGGGSLGSTGLAGIGGI |
Parental | QTEKETMQDLNDRLASYLDKVKSLETENRRLESKIREHLEKKGPQGVRDWGHYFKIIEDLRAQIFANSVD |
QTEKETMQDLND.LASY.DKV.SL.TENRRLESKIREHL.KKGPQGVRDWGHYFK.IEDLRAQIF.NSVD | |
Retrocopy | QTEKETMQDLNDCLASYIDKVQSLKTENRRLESKIREHLKKKGPQGVRDWGHYFKTIEDLRAQIFVNSVD |
Parental | NARIVLQIDNARLAADDFRVKYETELAMRQSVESDIHGLRKVVDDTNITRLQLETEIEALKEELLFMKKN |
NARIVLQID.ARLAADDFRVKY..ELAMRQSVESDIHG...VV.DTNITR.QLETEIEALK.ELLFMKKN | |
Retrocopy | NARIVLQIDKARLAADDFRVKYKKELAMRQSVESDIHGVLMVVGDTNITRRQLETEIEALKKELLFMKKN |
Parental | HEEEVQGLEAQIASSGLTVEVDAPKSQDLSKIMADIRAQYEALAQKNREELDK |
HEEEVQGLEAQIASSGLTVE.DAPKSQDLSKI.ADIRAQYE.LA......L.K | |
Retrocopy | HEEEVQGLEAQIASSGLTVEADAPKSQDLSKIIADIRAQYEPLASSSLNRLKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 1 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .48 RPM |
SRP007412_heart | 0 .00 RPM | 2 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .77 RPM |
SRP007412_liver | 0 .00 RPM | 104 .37 RPM |
SRP007412_testis | 0 .00 RPM | 0 .59 RPM |