RetrogeneDB ID: | retro_pabe_2769 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:112014751..112015186(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPPYG00000025869 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:RefSeq peptide;Acc:NP_001126750] |
Percent Identity: | 93.79 % |
Parental protein coverage: | 54.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI |
MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQV.QIRKKMMEI.T.EVQTNDLKEVVNKLI | |
Retrocopy | MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVCQIRKKMMEIITPEVQTNDLKEVVNKLI |
Parental | PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPP |
PDSIGKDIEKACQ.IYPLHDVF.RKVKMLKKPKFELGKLMEL.GEGSSSGKATGDETGAK.E.A.GYEPP | |
Retrocopy | PDSIGKDIEKACQPIYPLHDVFIRKVKMLKKPKFELGKLMELYGEGSSSGKATGDETGAKAE*AVGYEPP |
Parental | VQESV |
VQESV | |
Retrocopy | VQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .93 RPM |
SRP007412_cerebellum | 0 .12 RPM | 99 .96 RPM |
SRP007412_heart | 0 .00 RPM | 95 .16 RPM |
SRP007412_kidney | 0 .03 RPM | 145 .71 RPM |
SRP007412_liver | 0 .03 RPM | 124 .70 RPM |