Parental gene:

RPS3A, ENSPCAG00000015040

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Hyrax (Procavia capensis)
Coordinates:scaffold_70015:4083..9246(+)


>ENSPCAG00000015040
ATGGCGGTAGGCAAGAATAAACGCCTTACAAAAGGTGGCAAAAAAGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAA
AAAAGATTGGTATGATGTGAAAGCACCAGCTATGTTCAACATAAGGAATATTGGGAAAACACTGGTCACAAGAACTCAAG
GAACAAAAATTGCATCGGATGGCCTCAAGGGTCGTGTTTTTGAAGTGAGTCTTGCTGATCTGCAGAATGATGAAGTTGCA
TTTAGAAAATTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAATTGCCTAACCAATTTCCATGGCATGGATCTTACCCG
TGACAAAATGTGCTCCATGGTCAAGAAATGGCAGACCATGATTGAAGCTCATGTTGATGTCAAGACTACGGATGGTTATT
TGCTTCGTCTTTTCTGTGTTGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACTTCTTATGCTCAGCACCAACAG
GTCCGCCAAATCCGGAAGAAAATGATGGAAATCATGACCCGAGAGGTTCAGACAAATGACTTGAAAGAAGTTGTCAACAA
ATTGATTCCAGACAGCATTGGGAAAGACATAGAAAAGGCTTGCCAGTCTATTTATCCTCTCCATGATGTGTTTGTTAGAA
AAGTAAAAATGCTGAAGAAGCCAAAGTTTGAATTGGGGAAACTCATGGAGCTTCATGGTGAAGGCAGTAGTTCTGGAAAA
GCTACTGGAGATGAGACAGGTGCTAAAGTGGAACGAGCTGATGGCTATGAGCCACCTGTTCAAGAATCAGTGTAA

Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000015569 ortholog_one2one 9 retrogenes
retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Equus caballus ENSECAG00000009573 ortholog_one2one 6 retrogenes
retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Felis catus ENSFCAG00000031288 ortholog_one2one 5 retrogenes
retro_fcat_1110, retro_fcat_134, retro_fcat_1878, retro_fcat_780, retro_fcat_858,
Loxodonta africana ENSLAFG00000017660 possible_ortholog 3 retrogenes
retro_lafr_10, retro_lafr_38, retro_lafr_385,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2one 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo ENSMPUG00000007139 ortholog_one2one 8 retrogenes
retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Pongo abelii ENSPPYG00000025869 ortholog_one2one 27 retrogenes
retro_pabe_1339, retro_pabe_1572, retro_pabe_1636, retro_pabe_1895, retro_pabe_1899, retro_pabe_2117, retro_pabe_2570, retro_pabe_2578, retro_pabe_2661, retro_pabe_2769, retro_pabe_2779, retro_pabe_2826, retro_pabe_2942, retro_pabe_3014, retro_pabe_3076, retro_pabe_3186, retro_pabe_3214, retro_pabe_3560, retro_pabe_369, retro_pabe_3692, retro_pabe_394, retro_pabe_473, retro_pabe_550, retro_pabe_602, retro_pabe_789, retro_pabe_912, retro_pabe_985,
Pteropus vampyrus ENSPVAG00000015406 ortholog_one2one 24 retrogenes
retro_pvam_1053, retro_pvam_1056, retro_pvam_1058, retro_pvam_1138, retro_pvam_1180, retro_pvam_1203, retro_pvam_1476, retro_pvam_149, retro_pvam_311, retro_pvam_330, retro_pvam_354, retro_pvam_36, retro_pvam_368, retro_pvam_376, retro_pvam_462, retro_pvam_486, retro_pvam_582, retro_pvam_73, retro_pvam_754, retro_pvam_799, retro_pvam_86, retro_pvam_893, retro_pvam_917, retro_pvam_996,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_one2many 2 retrogenes
retro_shar_777, retro_shar_95,
Ictidomys tridecemlineatus ENSSTOG00000024203 ortholog_one2one 1 retrogene
retro_itri_58,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pcap_57 85.38 97.35
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2. retro_pcap_211 54.86 53.79
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3. retro_pcap_286 91.55 53.03
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4. retro_pcap_355 57.36 98.48
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5. retro_pcap_420 69.80 55.68
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6. retro_pcap_456 90.09 84.09
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Download FASTA sequences of all ENSPCAG00000015040 retrocopies