RetrogeneDB - Parental gene ENSFCAG00000031288 details

                            
>ENSFCAG00000031288
ATGGCGGTAGGCAAGAACAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCAAA

GAAAGATTGGTATGATGTAAAGGCACCAGCAATGTTTAATATAAGAAATATTGGAAAAACACTAGTCACGAGAACTCAAG

GAACCAAAATCGCATCTGATGGCCTTAAGGGTCGTGTGTTTGAAGTAAGCCTGGCTGATTTGCAGAATGATGAAGTTGCA

TTTAGGAAATTCAAGCTAATTACTGAAGATGTTCAGGGCAAAAACTGCCTGACTAATTTCCATGGCATGGATCTTACCCG

GGACAAAATGTGCTCCATGGTCAAAAAATGGCAGACCATGATTGAAGCTCACGTTGATGTCAAAACTACCGATGGGTATT

TGCTTCGTCTCTTTTGTGTCGGTTTTACTAAAAAACGCAACAATCAGATTCGGAAGACCTCTTATGCTCAGCACCAACAG

GTCCGCCAAATTCGGAAAAAGATGATGGAAATCATGACCCGAGAGGTGCAGACAAATGACTTGAAAGAAGTTGTCAATAA

ATTGATTCCAGACAGCATCGGAAAAGACATAGAGAAGGCTTGTCAGTCTATTTATCCACTTCATGATGTCTTCGTTAGAA

AAGTAAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAGCTCATGGAGCTTCATGGTGAAGGTAGCAGTTCTGGAAAA

GCTACTGGGGATGAGACCGGTGCTAAAGTTGAGCGAGCTGATGGATATGAGCCACCAGTCCAAGAATCTGTTTAA

Library	Parental gene expression (RPM)
SRP017611_brain	108 .69 RPM
SRP017611_kidney	585 .06 RPM
SRP017611_liver	279 .92 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Cavia porcellus	ENSCPOG00000015569	ortholog_one2one	9 retrogenes	retro_cpor_1154, retro_cpor_1229, retro_cpor_210, retro_cpor_383, retro_cpor_460, retro_cpor_555, retro_cpor_609, retro_cpor_646, retro_cpor_789,
Dipodomys ordii	ENSDORG00000002250	possible_ortholog	10 retrogenes	retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Equus caballus	ENSECAG00000009573	ortholog_one2one	6 retrogenes	retro_ecab_168, retro_ecab_222, retro_ecab_256, retro_ecab_597, retro_ecab_626, retro_ecab_885,
Erinaceus europaeus	ENSEEUG00000004994	possible_ortholog	4 retrogenes	retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Loxodonta africana	ENSLAFG00000017660	possible_ortholog	3 retrogenes	retro_lafr_10, retro_lafr_38, retro_lafr_385,
Macaca mulatta	ENSMMUG00000021821	possible_ortholog	1 retrogene	retro_mmul_2297,
Monodelphis domestica	ENSMODG00000000969	ortholog_one2many	6 retrogenes	retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mustela putorius furo	ENSMPUG00000007139	ortholog_one2one	8 retrogenes	retro_mputfur_1293, retro_mputfur_1363, retro_mputfur_278, retro_mputfur_316, retro_mputfur_504, retro_mputfur_695, retro_mputfur_764, retro_mputfur_847,
Mus musculus	ENSMUSG00000028081	possible_ortholog	2 retrogenes	retro_mmus_218, retro_mmus_254,
Procavia capensis	ENSPCAG00000015040	ortholog_one2one	6 retrogenes	retro_pcap_211, retro_pcap_286, retro_pcap_355, retro_pcap_420, retro_pcap_456, retro_pcap_57,
Pongo abelii	ENSPPYG00000025869	ortholog_one2one	27 retrogenes	retro_pabe_1339, retro_pabe_1572, retro_pabe_1636, retro_pabe_1895, retro_pabe_1899, retro_pabe_2117, retro_pabe_2570, retro_pabe_2578, retro_pabe_2661, retro_pabe_2769, retro_pabe_2779, retro_pabe_2826, retro_pabe_2942, retro_pabe_3014, retro_pabe_3076, retro_pabe_3186, retro_pabe_3214, retro_pabe_3560, retro_pabe_369, retro_pabe_3692, retro_pabe_394, retro_pabe_473, retro_pabe_550, retro_pabe_602, retro_pabe_789, retro_pabe_912, retro_pabe_985,
Pteropus vampyrus	ENSPVAG00000015406	ortholog_one2one	24 retrogenes	retro_pvam_1053, retro_pvam_1056, retro_pvam_1058, retro_pvam_1138, retro_pvam_1180, retro_pvam_1203, retro_pvam_1476, retro_pvam_149, retro_pvam_311, retro_pvam_330, retro_pvam_354, retro_pvam_36, retro_pvam_368, retro_pvam_376, retro_pvam_462, retro_pvam_486, retro_pvam_582, retro_pvam_73, retro_pvam_754, retro_pvam_799, retro_pvam_86, retro_pvam_893, retro_pvam_917, retro_pvam_996,
Rattus norvegicus	ENSRNOG00000011893	possible_ortholog	1 retrogene	retro_rnor_198,
Sarcophilus harrisii	ENSSHAG00000015088	ortholog_many2many	2 retrogenes	retro_shar_777, retro_shar_95,
Ictidomys tridecemlineatus	ENSSTOG00000024203	ortholog_one2one	1 retrogene	retro_itri_58,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_fcat_134	98.11	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_fcat_780	82.94	64.02	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_fcat_858	77.34	95.08	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_fcat_1110	75.80	58.33	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_fcat_1878	76.56	77.27	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSFCAG00000031288 retrocopies

Parental gene:	RPS3A, ENSFCAG00000031288
Aliases:	None
Description:	40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:P61246]
Organism:	*Cat (Felis catus)*
Coordinates:	B1:77220915..77225115(-)

Parental gene:

RPS3A, ENSFCAG00000031288