RetrogeneDB ID: | retro_ecab_885 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 6:59144441..59144874(+) | ||
Located in intron of: | ENSECAG00000007459 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.86 % |
Parental protein coverage: | 54.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAVGKNKRLTKGGK-KGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
MAVGKN..L.KGGK.K....KV...FSKKDWYDVKAP.MFNIRNI.K..................RV.EV | |
Retrocopy | MAVGKNNHLMKGGK>KEPRRKV-NLFSKKDWYDVKAPVMFNIRNIRKSQEFVHKNSRNQN*LMASRVSEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYL---LR |
SLADLQND.V.FRKF.L.TEDVQGKN.L.......L...K...MVKKWQ.M.EAH.DVKTTDGYL...L. | |
Retrocopy | SLADLQNDKVTFRKFNLFTEDVQGKNYLASMAWI-LPMTKCAPMVKKWQIMTEAHDDVKTTDGYLGYLLH |
Parental | LFCVGFT |
LF..GFT | |
Retrocopy | LFQAGFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 1423 .09 RPM |
SRP021940_cerebellum | 0 .00 RPM | 181 .19 RPM |
SRP021940_embryo | 0 .05 RPM | 677 .98 RPM |
SRP021940_placental_villous | 0 .05 RPM | 542 .50 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 598 .48 RPM |
SRP021940_testis | 0 .00 RPM | 148 .22 RPM |