RetrogeneDB ID: | retro_ecab_626 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 24:2080262..2080885(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000009573 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.42 % |
Parental protein coverage: | 79.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGK-NCLTNFHGMDLTRDKMCSMVKK-WQT |
.QGTKIA..GLKG.VF...L..LQNDE..FRK.KLITED..GK.NCLTNFH.MDLT...MCSMVKK.WQT | |
Retrocopy | SQGTKIAFNGLKGHVFKERLVALQNDEASFRKSKLITEDIEGK<NCLTNFHDMDLTHENMCSMVKKQWQT |
Parental | MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI |
..EA.VDVKTT...LL.LF.VGFTKK.NNQI.K.SY.QH.QV.QI..KMMEIM..E.QTN.L.E....LI | |
Retrocopy | TTEAKVDVKTTNCFLLHLFSVGFTKKSNNQIWKISYTQHLQVHQI**KMMEIMAKEEQTNNLTE----LI |
Parental | PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPP |
PDSIGKDIEKACQS.YP..DVF.RK.KMLKKP.FELGK.M.L.G.G.SSGKA.G.ETG.KVE.A.GYE.P | |
Retrocopy | PDSIGKDIEKACQSVYPHYDVFTRKAKMLKKPEFELGKHMKLQGTGNSSGKAPGHETGDKVE*ASGYETP |
Parental | VQE |
VQ. | |
Retrocopy | VQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 1423 .09 RPM |
SRP021940_cerebellum | 0 .00 RPM | 181 .19 RPM |
SRP021940_embryo | 0 .00 RPM | 677 .98 RPM |
SRP021940_placental_villous | 0 .00 RPM | 542 .50 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 598 .48 RPM |
SRP021940_testis | 0 .00 RPM | 148 .22 RPM |