RetrogeneDB ID: | retro_pvam_893 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_15410:7626..8418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSPVAG00000015406 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 75.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKK-DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
M.VGKN..LTKG..K...KK.V.....K.DW.DVKAPAMFNIRNI.KTLV.RTQGT.I.SD.LKG.VFEV | |
Retrocopy | MVVGKNMCLTKGD-KKGAKKKVVDPFSK<DWFDVKAPAMFNIRNIDKTLVMRTQGTQITSDNLKGHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SL.DLQND.VAF.K.KLITED.QGK.CL.NFHG.DLT..KMCSMVKKW..M.E.H.DVKTTDGYLLRLFC | |
Retrocopy | SLVDLQNDKVAFNKSKLITEDIQGKKCLVNFHGIDLTCNKMCSMVKKWHIMTEVHIDVKTTDGYLLRLFC |
Parental | VGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQ-TNDL-KEVVNKLIPDSIGKDIEKACQSIYP |
VGFTKK..N.QI.KTSYAQHQ...QI.KKMMEI.T.E.Q.TN.L....VNK.IPDSIGKDI.K.CQSIY. | |
Retrocopy | VGFTKKM>NDQIQKTSYAQHQRACQI*KKMMEIVT*ELQ>TNYLXXXXVNKVIPDSIGKDIVKTCQSIYL |
Parental | LHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEP-PVQESV |
L.DVFVRKVKMLKKPKFELGKLMELHGE.SS.GKAT..ETG.K.ERADG.EP.PVQESV | |
Retrocopy | LYDVFVRKVKMLKKPKFELGKLMELHGEDSSAGKATENETGVKAERADGCEP<PVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |